Gene detail

Gene detail information of Glyur000696s00018504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25870.1	0	haloacid dehalogenase-like hydrolase family protein
NR	XP_004498456.1	0	PREDICTED: uncharacterized protein LOC101499889 [Cicer arietinum]
COG	YP_004419518.1	2.00E-28	sugar phosphatase [Gallibacterium anatis UMN179]
trEMBL	tr\|I1M9Z5\|I1M9Z5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G21790.1}

Sequence

Transcript Sequence

>Glyur000696s00018504.1
GCTAAGTTTAGGGAAAAGGATCGAAGGATAAATATTCTCTTCTCTCTTTAGCCTCCTTGACCTTGTGTTGTGTTGTGTTTGTGTACGTCGAGGTCGCTGTCAAACCATAAAAACAACAAAATAATCCAGTTTGGTGGGACTGGGAACTGCGCATTCCTACATGCTTCTTCCTCGTTTCCCTCACCTCCTCCTCCTCCGCCANCACTCATCCCTCCCCATGGCACGTGCCATCACCACGTGCGCCGCTCAACAACCCCATTTGTACCCTCGCCGTCAGTATCGCCATGCCGTGGTATCATTGCCTCCTTCGAAGTTCTTCTTCTCTTCTTCCTCTTCCTCCTCCCTCTTCGGCCTTAGCAGCAGCAACAGCTTTAACGGCCTCCGACACGAAGGGAAGATCCGGGCGAGGGGACAGAGCAGCAGGGAGTATCGGAAGGTGAGAAGGCGAGCTCCCAAGAGCAAAGAGAAGCAGTTGGAACTCTGCGTCGACATTTGCATCGAAGAAGACTTACCCGACGATCCTGAAATCTTGAACATTGCTGAGATGCTTCGTCTAAATGTTCCGATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCCGGGTATAAAACAAGAGATGCTGCTATAGATGATGTTGGCGGGTTCGAAAGTGTTGAGTTATCGGTTCTTCTTTGCAACGATGAGTTTATTCGAAAACTTAACAAGGAATGGAGAGATGAAGATCATGCTACCGATGTTCTGTCAATGTCACAACACGTNCCTGGACTCAAGCTTCCTATTCTTATGTTGGGTGACATTGTAATTTCTGTTGAGACAGCAGCAAGACAAGCAGAGGAAAGAGGGCACACTCTTCTTGATGAGATCCGTATCCTCATGGTCCATGGCTTGTTACATCTTTTGGGATTTGATCATGAAATAAGCGAAGAGGCTGAAGTAGAAATGGAGAAAGAGGAGGAAATCCTTTTGAAGAGTCTTGGCTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGCTGAAGCAAATTCAAATTCTCACCAAGACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTGCTACAACTGCCAAGGCTTTGAGAGAGGCGTCATCAAGGGGTGTGAAGATTGTGATAGCTACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGATGGTGGATTTAACTGGNAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTTACAGGGACTACTTGTTTATGGTAGACAAGGTCGGGAAATATACAGGAGCAACTTAGATCCAAACGTCTGTAGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTAACCCTTTTTAATGACCCACTTGTCGATTCACTGCATACAGTATACCATGAGCCGAAGGCTGAGATCATGCCCTCTGTCGAACATCTTCTGGCTTCTGCAGACATACAGAAAATGATTTTCTTAGACACTGCCCAGAGGGTGGCTGATACAATACGGCCATACTGGTCAGACGCAACAAATGGTCGTGCCACTGTTGTTCAAGCTGTGCCAGACATGCTGGAAATTGTACCCTTGGGAACATCAAAAGGGAATGGAGTAAAAGTGCTTCTAGATCACTTGGGGGTTACTGCTAAGGAGATAATGGCTATTGGTGATGGGGAAAATGATGTTGAAATGCTTGAGCTGGCTTCTCTAGGCATCGCACTTAGTAATGGATCAGAGAAGACCAAAGCTGTGGCTAATGCAATTGGTTTAAGCAATGATGAAGATGGTGCAGCAGATGCCATCTACCGGTATGCATTCTGAGCAGCTGAAGGCTACAATAATTATTTCATTCAATTCCATTCCTATAGGGGTTCAAGCTATTACCCCTGATTATAATTTTTTTGTTTGTTGGGATTTTCCATTTATTTTCCTTCACAAAAGGTCAAAGGTGAAGAACGTATACCGTGTCATTTATCTCGATCATTAGAATCTGTAACTAATCCTTCTTTCGTTAAGGTTGCATNGGGTTCATGCCTGAAGGCATACCAGCTTTGCATCCCCTTTTACTATATNAATTTATGATGGAAAATTCAGGCTGTTACTGTGAACAGTTTGATGAATTTTATTGTCTTATATGCATTTGCCATGGTAAATAATAACTCTTGTGGATCATCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00696	20868	25890	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006364 rRNA processing

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004222 metalloendopeptidase activity

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000696s00018504.1	PF02130.12	UPF0054	164	274	9.90E-36
Glyur000696s00018504.1	PF08282.7	Hydrolase_3	317	581	2.30E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.064
SRR1783600	control	4.148
SRR1783602	moderate drought stress	2.322
SRR1811619	moderate drought stress	2.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.998
DRR006520	Root Summer glycyrrhizin high producing strain	3.060
DRR006521	Root Winter glycyrrhizin high producing strain	1.098
DRR006522	Root Winter glycyrrhizin high producing strain	1.173
DRR006523	Root Summer glycyrrhizin low producing strain	2.469
DRR006524	Root Summer glycyrrhizin low producing strain	2.517
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.791
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.182
SRR2868004	Drought Stress (root)	9.028
SRR2967015	Control (root)	9.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.744
SRR9715740	Leaf	10.910
SRR9715741	Leaf	19.403
SRR9715739	Root	1.051
SRR9715742	Root	5.603
SRR9715743	Root	4.999

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.529
SRR8749028	MeJA induced 9h	4.506
SRR8749029	MeJA induced 9h	3.655
SRR8749030	Uninduced	0.557
SRR8749031	Uninduced	0.404
SRR8749032	Uninduced	0.522

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.742
SRR8400027	Control - Root	10.241