Gene detail

Gene detail information of Glyur000695s00020680

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29250.1	8.00E-23	HXXXD-type acyl-transferase family protein
NR	XP_006604843.1	3.77E-140	PREDICTED: shikimate O-hydroxycinnamoyltransferase-like [Glycine max]
Swissprot	tr\|Q8GSM7\|HST_TOBAC	2.00E-11	Shikimate O-hydroxycinnamoyltransferase
trEMBL	tr\|I1NC89\|I1NC89_SOYBN	1.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G43340.1}

Sequence

Transcript Sequence

>Glyur000695s00020680.1
ATGAATAAGTTGAGAAAATATTTTGGCTGTTCTGTGATTTCCCAACTGATTCTCAAGTTTAATCCAAACAAACACAAGGATGTGATAAACAGCTTCGAAGGAGGAGGTGTTGCAATAGGACTAAGCTGTAGCCACATGCTTGCTGATCTAACTTTCGCAGCGTCATTCTTCAAATCATGGACAGAAGTTCACCGCCACTTGCCCATTACCCACCCTCCTTTCCTCACTCCAATCCGCGCTTCACCGCTCCCAAACGCATCAACCACGCCAGTGTCACCACCAACAAGGGACACTTCAAGAAATGTTGTTATGGCCACAGCCACTTTCAAATTCCCCGGCTCAATCATCAACCGGTGCCTCTCCAAACTACACGACACGTGTCCCAATGCCACCCCATTTGACTTCCTGTCAGCACTGTTCTGGACNCGCATTGTTCCCTTGAAGCCTCCAAAGAGTCACGGTCAAACCCAAACCCACACTCTATCGATCTGCACCGACTTCAGGAGCCTCATAAAACCATCCCTCCCTATTGGGTATTTCGGCAACGCGTTGCATTTTTCAACGCTCTCATTAAAAGCGGAAGAAATGGAAATGGAGAGTGGCCAATTGGGAGGCATAACTAGCCTAGTGCATAGCCACGTGGCAGGGGTTGCAGGAGCAGAGGAAGAAATATGGTCTTCAATTGAAGGGTTTGNGTCACAGAAGGAATCAACAGAGGGAGGAGGGAAGTTTGGGTCACCGAATTGCATGTATGGGACAGAGTTAACATGTGTTTGCATGGAGCACATGATGGATATTTCGTCTGAGCCTGCTGAGTCGTTGCTGTATGGGGCAATGTTCAGTGAGAGTGAGAAGCCAGCTCATGTTTCGTGTCACGTGGGGAATGTNGACGGTGAGGGGTTGATCATGGTGATGCCTTCACCGGAAGGAGGGCTTGCGAGAACGGTGATGGTGATGCTGCCGGAGGATGAACTTGCTAAACTGAGCAACGATCACGCAATATTGCAGCTGGAACCAACAATGATCCTTGCTGGTTGTGGGGCAGACCGTACCGTTGATTTTTCTGCGTAGACTTTAATAATCTAACAGTACTATTATGTCTCCGGAGAAATTAATTTTCGGTAGGGTGGTGGTTGGTTGTACCTATAAACTTCAGGTCAGGGACGAGACTAGTCTTATTGCACGCTGCTCACGCCTCCTAAATCATAGTGCAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00695	125986	127429	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000695s00020680.1	PF02458.10	Transferase	29	332	6.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.090
SRR1783600	control	0.121
SRR1783602	moderate drought stress	0.125
SRR1811619	moderate drought stress	0.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.624
DRR006520	Root Summer glycyrrhizin high producing strain	0.690
DRR006521	Root Winter glycyrrhizin high producing strain	0.183
DRR006522	Root Winter glycyrrhizin high producing strain	0.177
DRR006523	Root Summer glycyrrhizin low producing strain	0.362
DRR006524	Root Summer glycyrrhizin low producing strain	0.272
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.634
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.757
SRR2868004	Drought Stress (root)	3.340
SRR2967015	Control (root)	5.127

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.934
SRR9715740	Leaf	1.908
SRR9715741	Leaf	2.064
SRR9715739	Root	0.632
SRR9715742	Root	0.502
SRR9715743	Root	0.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.019
SRR8749028	MeJA induced 9h	0.483
SRR8749029	MeJA induced 9h	0.450
SRR8749030	Uninduced	0.234
SRR8749031	Uninduced	0.384
SRR8749032	Uninduced	0.318

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.913
SRR8400027	Control - Root	2.668