Gene detail

Gene detail information of Glyur000695s00020671.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28840.2	0	GDP-D-mannose 3',5'-epimerase
NR	NP_001276258.1	0	uncharacterized protein LOC100527798 [Glycine max]
COG	YP_589972.1	6.00E-124	NAD-dependent epimerase/dehydratase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q2R1V8\|GME2_ORYSJ	0	GDP-mannose 3,5-epimerase 2
trEMBL	tr\|I1NC94\|I1NC94_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G43410.1}

Sequence

Transcript Sequence

>Glyur000695s00020671.1
ATTTGGGAAGAAGTAATGAACGAGTGGCCACACCTTCTTCACACATACACATACCGTTTTATTATCTATATATAGGCGTGACATCTCTTCGCATGGATTCGTATCTAAACCCAATTCCAATCCATTCTTCACTCCTGTGCCTACTATCTCATCCATTCTCAGAATGGGAAGTTCTGGAACAACAACCGACTATGGCGCATACACTTATCAAAACCTTGAGAGAGAGCCTTACTGGCCATCGGAAAAGCTCAGAATTTCCATCACCGGGGCCGGCGGTTTTATCGCCTCACACATTGCCCGCCGCCTCAAGACGGAGGGGCATTACATCATTGCCTCTGACTGGAAGAAGAATGAACACATGACTGAGGACATGTTCTGCCATGAGTTCCACCTTGTTGATCTCAGGGTCATGGATAATTGCCTCAAGGTTACCAAGGGTGTGGACCATGTTTTCAATCTTGCTGCTGACATGGGTGGGATGGGTTTCATCCAGTCCAACCACTCTGTCATTATGTACAACAACACAATGATTAGCTTCAACATGATTGAGGCTGCCAGGATTAATGGTGTTAAGAGGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGAAACCAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGCCGCAAGATGCATATGGGCTAGAGAAGCTTGCAACAGAAGAGTTGTGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCATAACATTTATGGCCCTTATGGGACATGGAAAGGNGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGGCACTTACTTCCACAGATAGATTTGAGATGTGGGGAGATGGATTACAAACACGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGCGTACTTAGATTGACTAAATCAGACTTCCGGGAGCCAGTGAATATNGGAAGTGATGAAATGGTTAGCATGAATGAGATGGCTGAGATTGTNCTTAGCTTTGAGAACAAGAGCATACCCATACACCACATTCCTGGTCCAGAGGGTGTTCGGGGTCGTAATTCTGACAATACACTAATCAACGAGAAACTTGGATGGGCTCCAACAATGAAGTTGAAGGATGGCCTGAGAATTACATACTTTTGGATTAAAGAGCAGCTTGAGAAAGAGAAGGCTCAAGGTGTTGATTTAGCAGCCTATGGATCATCCAAAGTGGTACAGACTCAAGCCCCTGTTCAACTAGGCTCACTTCGGGCAGCCGATGGCAAAGAATAAAGCGACACATTTCTCTAGTAATCACCTAAATGTTTCAAGTGAAGGGTTAGTTTTACATTGCGAGAGATATTTGGTTATAGTTAATTAGTTCTATTAAGGTTGATTTTGAAGTTTGCTCGTGTGTTTGACCGGAACATATAATGCTTCTATTGTATTTTATGTAGCCTGTTTGAGGCAGTACTTGGTGCGTAAGTTGTTGTCACCACTNCAATAGTGATTCTGAATTATGTGTTTTTTAAGTTTGAATAATTGATTGCCAAGCATAGAGTTTTCTCCCATTTGAATTTCAATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00695	97645	101470	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10046	GME	EC:5.1.3.18 5.1.3.-	Ascorbate and aldarate metabolism	map00053
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000695s00020671.1	PF01370.16	Epimerase	31	264	2.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	85.406
SRR1783600	control	85.960
SRR1783602	moderate drought stress	107.770
SRR1811619	moderate drought stress	106.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.333
DRR006520	Root Summer glycyrrhizin high producing strain	23.489
DRR006521	Root Winter glycyrrhizin high producing strain	6.919
DRR006522	Root Winter glycyrrhizin high producing strain	6.723
DRR006523	Root Summer glycyrrhizin low producing strain	11.564
DRR006524	Root Summer glycyrrhizin low producing strain	11.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	184.106
DRR006526	Leaf Summer glycyrrhizin high producing strain	182.831

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.163
SRR2868004	Drought Stress (root)	65.914
SRR2967015	Control (root)	49.809

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	416.273
SRR9715740	Leaf	352.042
SRR9715741	Leaf	219.968
SRR9715739	Root	155.087
SRR9715742	Root	137.308
SRR9715743	Root	137.159

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.472
SRR8749028	MeJA induced 9h	19.755
SRR8749029	MeJA induced 9h	21.017
SRR8749030	Uninduced	7.795
SRR8749031	Uninduced	4.908
SRR8749032	Uninduced	7.958

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.937
SRR8400027	Control - Root	40.563