Gene detail

Gene detail information of Glyur000695s00020668

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28750.1	2.00E-29	Bacterial sec-independent translocation protein mttA/Hcf106
NR	XP_004494699.1	7.03E-52	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like [Cicer arietinum]
COG	YP_001867634.1	1.00E-19	twin arginine translocase protein A [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9XH46\|TATA_PEA	3.00E-40	Sec-independent protein translocase protein TATA, chloroplastic (Precursor)
trEMBL	tr\|I3SVA3\|I3SVA3_MEDTR	7.00E-52	Uncharacterized protein {ECO:0000313\|EMBL:AFK44195.1}

Sequence

Transcript Sequence

>Glyur000695s00020668.1
ATGAAATCCAGCGTATAGGTTTGTTTTGGTGAGAGTGGTGGNGGTGTCCTCGTGTTGGGTTATTTTATCTAATANTTTTATTTAAAAATAAAAAAGAAAGAAGGAAATCTTAGCCGCAGAGGAGAGGGAAGCGAAGATGGCGATGATGAGCGGTGTTTCGTTATTATCGTCTTCAACAAGACCAATAGCGAATAACCTCAACCTGGGTTTCTCTTCTTCGTCTTCATCCTTGTGTTCCACTGCGAGGGTTAGTCCACGTAAGCAGTGGATAGGAGGCAGCAACAGAAGAAGAAACAACAACAAGGGTGGTCTGATTTGCAACGCCTTGTTTGGATTGGGCGTACCCGAACTGGTGGTAATTGCGGGAGTGGCTGCCCTCGTTTTCGGACCCAAGAAGTTGCCCGAAGTTGGTCGCAGCATCGGCAAAACCGTCAAGAGCTTCCAACAGGCAGCAAAGGAGTTTGAGTCCGAGCTTAAAAAGGAGCCCGATTCCACAGGAGGGGGGCCATCTGAGAAATCTATTGCTGTGAGCGAAGAGGAGAAGCAAGATGCTGAGGTGTCTAGTTCTAAGGAGAGTGTGTGAGATTCGTAAAAGATATGATGTGATATGTAAGTAGGTATCAAATTTTCGCCATGACAATTATGCATTTAAAAGAAACCATTTTTCTCTAACTAAGAGCTGTTAATTAAGCATTTCATCAGTTCATTCATGACAAAGCTTTAAAATAAAAGATTGATTCATTGGCTGGTGGATGTGGGTGATTACCCCATACGAGAAAATAATGAGAGGGATACTAGTGTAGATTGAAACGTTGAAGAAATCAATAATTGTTTCTTCACTATGGCCACCGGATGATCTATGTCCTCAAGTTATTGTAGATCCATTAGCAAACGGAAGGACCAAACATGGTTGATAGCAGTAGTATTAAACTTCGCTTCTATGGATGTGGATGGAAAAGAAAAGGTATAGAAAAGAACATCACGGAAGGAAAGAAAGTGGACTGATAGGGGAAGAATTGAGGGGGAAACAAAGATTTAATAAGGTTGAACTTTTAGTTTTGTTATTTTATCCATTCTCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00695	77249	78739	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009306 protein secretion

GO:0015031 protein transport

cellular_component

GO:0005886 plasma membrane

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0008565 protein transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000695s00020668.1	PF02416.11	MttA_Hcf106	67	116	3.90E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.353
SRR1783600	control	11.311
SRR1783602	moderate drought stress	10.844
SRR1811619	moderate drought stress	10.833

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.488
DRR006520	Root Summer glycyrrhizin high producing strain	19.284
DRR006521	Root Winter glycyrrhizin high producing strain	16.381
DRR006522	Root Winter glycyrrhizin high producing strain	15.883
DRR006523	Root Summer glycyrrhizin low producing strain	21.436
DRR006524	Root Summer glycyrrhizin low producing strain	22.184
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.435
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.130
SRR2868004	Drought Stress (root)	30.010
SRR2967015	Control (root)	29.735

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	88.112
SRR9715740	Leaf	88.703
SRR9715741	Leaf	74.308
SRR9715739	Root	26.437
SRR9715742	Root	22.292
SRR9715743	Root	22.944

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.871
SRR8749028	MeJA induced 9h	9.006
SRR8749029	MeJA induced 9h	15.096
SRR8749030	Uninduced	12.166
SRR8749031	Uninduced	6.150
SRR8749032	Uninduced	17.891

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.500
SRR8400027	Control - Root	40.677