Gene detail

Gene detail information of Glyur000695s00020661.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04720.1	2.00E-73	pathogenesis-related 4
NR	XP_004494704.1	2.82E-125	PREDICTED: hevein-like preproprotein-like [Cicer arietinum]
Swissprot	tr\|P02877\|HEVE_HEVBR	2.00E-102	Win-like protein (Precursor)
trEMBL	tr\|C6T035\|C6T035_SOYBN	3.00E-124	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU14858.1}

Sequence

Transcript Sequence

>Glyur000695s00020661.1
CAAAAATATAATTTTACCTATATTTTAATTCAATAACTATAATTAAATACTCATATTCCTCGGTTGTCAATTGATACACTCTGTCCCATCTAGGCCTTTAGCCGCCCCCTATGATTGACGTATGCATCTTCCCCTCGTTCTCAGCCATTTGATCCTCTGACTCGTTCATGAGACCCATCATCCAACATTCATCCACGGATCGACCCCACAGGAAACGACATATCTAATACCACACCAGCACTGCCCCCTCCTCTAACTCTCCTCTCATAGCCGCCACACACACATGGCCATGTATATAGTGTCATTTAACTCTTAGCATTTTTTTTTTTTGATCAATCGGAAAACAATTTAACTCTTAGCATATACAATATAATATCAATACATTAATGCAAAGAAATTAGGGGTAGCTAATGGAAAATGATGGGTGTGGTTTGGTATGGCCCTCAATTAATTCATTTATATAAAGTGTGAAGCAATGCAGGGGAAAGTGTCAAAAGAGTANTTGTGAAGGAAGACATGGAAAAAATTGGGGTAGGCCTGGCGGTGTTACTATTGGCGTGTTTGATTGTGACGGCGATNGGTGAACAATGCGGTAGGCAAGCCGGAGGGAAGACATGCCCAAACAACCTGTGCTGCAGCCAATACGGTTACTGTGGCAACACCGATGATTACTGTTCCCCCTCCAAGAACTGCCAAAGCAACTGTCAGGGCGGTGGCGGAGGCGGAGGAGAAAGCGCATCGAATGTCCGCGCCACGTATCACTACTACCAACCGGAGCAGCACGGGTGGGACTTGAACGCCGTGAGTGCTTACTGCTCCACGTGGGATGCCAGCAAGCCTTACTCGTGGCGCAGCAAGTATGGTTGGACCGCTTTCTGTGGCCCCGTTGGACCTCGCGGTCAAGCTTCCTGTGGAAAGTGCCTCCGAGTGACGAACACAGGGACGGGAGCACAGGCAACGGTGAGGATCGTGGATCAGTGCAGCAACGGAGGGTTAGATTTGGATGTGGGGGTGTTCAACAGGATAGACACGGATGGCAGAGGATACCAACAGGGGCATCTCATCGTGAACTACCAGTTTGTGAACTGTGGGAATGAGCTGGTGGACCTCATGACCAACCCTCTGCTCTCCATCCTCGACCATTGATTGAGAATCATATCTATCTCCTTAACGAAGATTGATAAAACTAAACTACGTATTGCTACTCAAATTAATCTATCTCTGTTTTCTCTGCTGCCTCTCTAGTCTCTATCAATAAGTGGCCGGTCGTGTGAGTAACACAGTCTCTGTGACAGACTAGAGTCTTTCCTTCACTTTGGGAAAGATCAAAATTATTCCCACATCCTCATGAGAATAAAACTATATATACTTANGGATTTGGTTATATATCCTTATGACATGAAAGTTCATACTATCATCATCAGCTTATTCCCTTACTCTCTCCCTCTCCTATTCTAGTACAATCAAAATTNATGAATTTCCAACTGTGTTGCTATGTGTGATGAGTGTTTTTGTGTTGGCAAGCCCACTTAAGGTTAAAGATGTTANCTCCGACGGGATTAATTAAGGTTCAAAGTTGAAATCTGATGACGAATATGTTTGTGGTCAAAGCGGAATACATATATTCTATACAGGAGGAATTAAACATTTATTTTACGGGATGTAGTGTTACGACTGCCATCTTAAGTTTCATTCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00695	48032	49851	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM18

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0042742 defense response to bacterium

GO:0050832 defense response to fungus

molecular_function
GO:0008061 chitin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000695s00020661.1	PF00187.14	Chitin_bind_1	22	63	5.00E-18
Glyur000695s00020661.1	PF00967.12	Barwin	73	191	4.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.279
SRR1783600	control	5.001
SRR1783602	moderate drought stress	9.957
SRR1811619	moderate drought stress	9.912

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.168
DRR006520	Root Summer glycyrrhizin high producing strain	1.138
DRR006521	Root Winter glycyrrhizin high producing strain	6.543
DRR006522	Root Winter glycyrrhizin high producing strain	6.415
DRR006523	Root Summer glycyrrhizin low producing strain	0.643
DRR006524	Root Summer glycyrrhizin low producing strain	0.576
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.677
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	101.115
SRR2868004	Drought Stress (root)	123.802
SRR2967015	Control (root)	98.662

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	328.306
SRR9715740	Leaf	60.488
SRR9715741	Leaf	210.522
SRR9715739	Root	38.282
SRR9715742	Root	74.354
SRR9715743	Root	67.410

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	114.106
SRR8749028	MeJA induced 9h	186.193
SRR8749029	MeJA induced 9h	156.968
SRR8749030	Uninduced	506.807
SRR8749031	Uninduced	477.400
SRR8749032	Uninduced	671.704

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.542
SRR8400027	Control - Root	62.610