Gene detail information of Glyur000695s00020660.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04720.1 | 9.00E-48 | pathogenesis-related 4 |
| NR | NP_001235941.1 | 3.29E-81 | uncharacterized protein LOC100526916 precursor [Glycine max] |
| Swissprot | tr|P29062|PR4A_TOBAC | 2.00E-63 | Pathogenesis-related protein PR-4A (Precursor) |
| trEMBL | tr|C6T2R0|C6T2R0_SOYBN | 1.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G40770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00695 | 45780 | 46605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM18 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000695s00020660.1 | PF00967.12 | Barwin | 22 | 131 | 6.20E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.663 |
| SRR1783600 | control | 69.287 |
| SRR1783602 | moderate drought stress | 104.925 |
| SRR1811619 | moderate drought stress | 104.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.203 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.690 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 81.694 |
| SRR2868004 | Drought Stress (root) | 15.729 |
| SRR2967015 | Control (root) | 3.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 235.260 |
| SRR9715740 | Leaf | 141.401 |
| SRR9715741 | Leaf | 220.288 |
| SRR9715739 | Root | 208.427 |
| SRR9715742 | Root | 107.739 |
| SRR9715743 | Root | 124.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.843 |
| SRR8749028 | MeJA induced 9h | 302.172 |
| SRR8749029 | MeJA induced 9h | 269.410 |
| SRR8749030 | Uninduced | 3593.784 |
| SRR8749031 | Uninduced | 3625.887 |
| SRR8749032 | Uninduced | 1732.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 261.092 |
| SRR8400027 | Control - Root | 226.208 |