Gene detail information of Glyur000694s00023257 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27550.1 | 4.00E-62 | centroradialis |
| NR | XP_007150078.1 | 2.40E-99 | hypothetical protein PHAVU_005G124600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9XH42|CET4_TOBAC | 3.00E-90 | CEN-like protein 4 |
| trEMBL | tr|V7BVM9|V7BVM9_PHAVU | 9.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:ESW22072.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00694 | 97625 | 98970 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000694s00023257.1 | PF01161.15 | PBP | 26 | 157 | 9.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.485 |
| SRR1783600 | control | 0.437 |
| SRR1783602 | moderate drought stress | 0.139 |
| SRR1811619 | moderate drought stress | 0.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.344 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.331 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.891 |
| SRR2868004 | Drought Stress (root) | 7.944 |
| SRR2967015 | Control (root) | 12.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.324 |
| SRR9715743 | Root | 0.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.913 |
| SRR8400027 | Control - Root | 1.533 |