Gene detail

Gene detail information of Glyur000694s00023255

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22460.2	5.00E-111	alpha/beta-Hydrolases superfamily protein
NR	XP_003596803.1	0	hypothetical protein MTR_2g086300 [Medicago truncatula]
COG	YP_007054897.1	2.00E-15	alpha/beta hydrolase [Rivularia sp. PCC 7116]
trEMBL	tr\|G7ITR5\|G7ITR5_MEDTR	0	Alpha/beta hydrolase family protein {ECO:0000313\|EMBL:AES67054.1}

Sequence

Transcript Sequence

>Glyur000694s00023255.1
ATGCAGCACTTTGATGTCCGTATACTTTTTCTTGTAGCAATGATTAAGCCAATGGCAGTGGCAGTGGCACTGATGGTGATTCTCATAGGGTGGACTTATATGTCCTTAAAGCCTCCTCCTCCTAAAACATGTGGATCTGTGAATGGCCCTCCAGTAACTTCACCTAGAGTGAAACTCAGTGATGGGAGACATTTGGCCTACAGGGAGTTTGGTGTTCCAAAGGAAGAAGCCAAGTACAAGATCATTGTCATTCATGGATATGCCAATTCCAAAGATTCACATTTGCCTGTTTCTCAAGAACTTATTGAAGATCTTGGGATATATTTCCTCTACTTTGACAGAGCAGGTTATGGTGAGAGTGATCCATATCCATTGCGTTCGGTGAAGAGTGAAGCTTATGATATTCAAGAACTAGCTGATAAATTGCAGATTGGGCAAAAATTTCATATCATTGGAATATCAATTGGAGCTTACCCTGTTTGGAGCTGCCTAAAATACATTCCACATNGGCATGTTAACCTTGCTGACTTATATAGCTTCATTTTGCTTTTGATATTATCTGGAGCAGCAATGGTAGTTCCATTTGTAAATTATTGGTGGCCTTCGTTTCCTGATAATCTATCAACAGAGGCCTTTCGGATGCTCCCTCAGCCAGATCAATGGACATTTCGAGTTGCACANTATGCCCCTTGGTTATTCTATAAGTGGATGACACAAAAATGGTTCCCTTCATTAACTTTGACAAATATTGAAATGTTCTCAGTANCTGATGATATAGGGATCTTGAAGAATTCAGAAAGCCAAGACAGTGNTCAGCAAGGTGAATATGAATCATTACACCAAGACATGATAGCTGGATTTGGAAAGTGGGANTTTGGGCCATTGGATATAAGAAATCCATTCCCTGACAGTGATGGTTCTGTCCACATCTGGCAAGGCTTTAAAGATAGGATCATCCCCTATATGATGAACCGCTACATCTCACAAAAACTTCCGTGGATTCATTATCACGAGGTTCCTGACGGAGGGCATCTATTTATCTGGAAGAAGATAGCAGCATCTGTGTTGATAGCGAGCATTCTCATCATTTATGCATATATGAGAATGAGGCCTCCCCCACCAAAAATTTGTGGTACACCAACTGGTCCTCCAGTTACTTCATCAAGAATAAAGCTCAGTGATGGTAGACATTTGGCTTACAGGGAGAAAGGTGTGCCTAAAGAAAAGGCCAGACACAAGGTCATCCTTGTCCATGGCTATGACAGCTCCAAGGATTTATATCTACCACTTTCTCAAGAGGTCATGGATGAGATGTGTTTATATGTTGTGACATTTGACAGAGCTGGATATGGAGAAAGTGATCCTAACCCAAAACGCAATGTGAAAAGTGAAGCATTTGATATCCAAGAACTTGCTGATCAGTTGCAGCTAGGCCCAAAATTTAATCTCATTGGACTCTCCATTGGAACTTACGCAAGCTTAATTGGTCGCAGGCTAGCTGGTGTGACTCTTGTAGTTCCTGTGATCAATTTNTGGTGGCCTTCTTTTCCTCCAAAATTGACCAACGAGGTATTTGGAAAGCAACTTAAAAGGGACCAATGGAAACTTCGGATTGCACACTATGCCCCTGGACTGCTGTATTGGTGGATGACCCAGAAGTGGTTCCCTCGTGATTCGGTAATGGAGAGACATCCAATACTCTCTAACAAAAGGGATATGGAAACTATAAAGCAAATGTCACAAGTACATATGCCCCATGAGGTCCAATATAAGGTACGACAACAAGGTGAATATGAATCCCTGCATCGAGATCTAATAGTNCATTTTGGCAACTGGGAATTTGACCCAATGGAGCTAGAAAGTCCATTCCCCCAAAATGAGGGTCGACGTGTGTATNTTTGGCATGGTCACGAAGATAAGCTTGTACCATTTGAACTACAACGATACCTTGCCAAGCAACTACCTTGGATACGATCCATAAATCAGGAGAAGAAGATGAAAAGAATAAGACATTATCTCAAGTTTCTAACTGAAACTCCACAAGGTCAGACACGGAAAATCTGCAGATGTTTCTGTCAGGGAACTCAGCTTTCTCCAAACCATGATGATTCAACTTCAACAGATGATTTTGCTGTGGTTTCACCAAGAATCAGACTCAGAGATGGGAGGCACCTGGCTTACCTTGAGAGAGGAGTCCCCAAGGACAAAGCAAAATACAAGATCATCATTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAAGAACTAATAGATGAACTGGGCATATACCTTCTGCAATATGACCGGGCTGGATATGGAGAAAGTGATCCAAANCCCAAACGCTCACTCAAAAGTGAAGCACTTGACATTCAAGAGCTTGCTGATCAGCTACAGATAGGANCACAATTCTATGTAATTGGAGTCTCAATGGGTTCATACGCCACCTGGAGTTGCCTAAAGTATTTGCCCCACAGGCTTGCAGGGTTGGCACTAATAGCCCCAGTGATCAATTACAAGTGGCCTTCCCTCCCTGGGAGTCTGATAAGGGAAGACTACAGGAGGAGACTTGTTAGGTGGGCACTGTGGCTTGCAAAGTACTGTCCTACACTATTGCATTGGTGGGTGACCCAAAAGTGGCTCCCTTCAGCTGCTGTCATAGAAAAGAACCCAGCATTCTTCAACAAAAGTGACATTGATATCTTGAAGACAATTCCCGGGTTCCCAATGTTTTCNAAGGACAGGTTAAGGGAACAGGTTGTTTTTGACACTCTTCGCCATGATTGGAGGGTGGCTTTTGGCAAATGGGAGTTTGACCCAATGAAGCTAAGCAATCCATTCCCACACAAGAGAAGTTCTTTTCACATTTGGCAGGGCTATGAAGACAAGGTTGTGCCCTCTGAACTACAGAGATTTGTTTCAGGGAAGCTGCCTTGGATACAATACCATGAAGTTCCAGATGGTGGCCATTTAATTGTGTACTACAGGGGATTAAATTAA

Protein Sequence

>Glyur000694s00023255.1
MQHFDVRILFLVAMIKPMAVAVALMVILIGWTYMSLKPPPPKTCGSVNGPPVTSPRVKLSDGRHLAYREFGVPKEEAKYKIIVIHGYANSKDSHLPVSQELIEDLGIYFLYFDRAGYGESDPYPLRSVKSEAYDIQELADKLQIGQKFHIIGISIGAYPVWSCLKYIPHXHVNLADLYSFILLLILSGAAMVVPFVNYWWPSFPDNLSTEAFRMLPQPDQWTFRVAXYAPWLFYKWMTQKWFPSLTLTNIEMFSVXDDIGILKNSESQDSXQQGEYESLHQDMIAGFGKWXFGPLDIRNPFPDSDGSVHIWQGFKDRIIPYMMNRYISQKLPWIHYHEVPDGGHLFIWKKIAASVLIASILIIYAYMRMRPPPPKICGTPTGPPVTSSRIKLSDGRHLAYREKGVPKEKARHKVILVHGYDSSKDLYLPLSQEVMDEMCLYVVTFDRAGYGESDPNPKRNVKSEAFDIQELADQLQLGPKFNLIGLSIGTYASLIGRRLAGVTLVVPVINXWWPSFPPKLTNEVFGKQLKRDQWKLRIAHYAPGLLYWWMTQKWFPRDSVMERHPILSNKRDMETIKQMSQVHMPHEVQYKVRQQGEYESLHRDLIVHFGNWEFDPMELESPFPQNEGRRVYXWHGHEDKLVPFELQRYLAKQLPWIRSINQEKKMKRIRHYLKFLTETPQGQTRKICRCFCQGTQLSPNHDDSTSTDDFAVVSPRIRLRDGRHLAYLERGVPKDKAKYKIIIVHGFGSSKEMNFLAPQELIDELGIYLLQYDRAGYGESDPXPKRSLKSEALDIQELADQLQIGXQFYVIGVSMGSYATWSCLKYLPHRLAGLALIAPVINYKWPSLPGSLIREDYRRRLVRWALWLAKYCPTLLHWWVTQKWLPSAAVIEKNPAFFNKSDIDILKTIPGFPMFSKDRLREQVVFDTLRHDWRVAFGKWEFDPMKLSNPFPHKRSSFHIWQGYEDKVVPSELQRFVSGKLPWIQYHEVPDGGHLIVYYRGLN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00694	77183	89048	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000694s00023255.1	PF12697.2	Abhydrolase_6	81	348	1.20E-17
Glyur000694s00023255.1	PF12697.2	Abhydrolase_6	414	658	2.10E-13
Glyur000694s00023255.1	PF12697.2	Abhydrolase_6	741	997	3.00E-24
Glyur000694s00023255.2	PF12697.2	Abhydrolase_6	81	348	1.00E-17
Glyur000694s00023255.2	PF12697.2	Abhydrolase_6	414	658	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.209
SRR1783600	control	5.247
SRR1783602	moderate drought stress	5.954
SRR1811619	moderate drought stress	6.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.884
DRR006520	Root Summer glycyrrhizin high producing strain	8.289
DRR006521	Root Winter glycyrrhizin high producing strain	8.706
DRR006522	Root Winter glycyrrhizin high producing strain	8.570
DRR006523	Root Summer glycyrrhizin low producing strain	7.483
DRR006524	Root Summer glycyrrhizin low producing strain	7.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.496

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.937
SRR2868004	Drought Stress (root)	4.077
SRR2967015	Control (root)	3.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.926
SRR9715740	Leaf	7.858
SRR9715741	Leaf	4.556
SRR9715739	Root	1.142
SRR9715742	Root	3.731
SRR9715743	Root	3.751

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.616
SRR8749028	MeJA induced 9h	1.923
SRR8749029	MeJA induced 9h	1.335
SRR8749030	Uninduced	1.945
SRR8749031	Uninduced	1.376
SRR8749032	Uninduced	1.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.142
SRR8400027	Control - Root	23.843