Gene detail

Gene detail information of Glyur000694s00023244

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08360.1	4.00E-96	Ribosomal protein L1p/L10e family
NR	XP_003543429.1	5.59E-150	PREDICTED: 60S ribosomal protein L10a-1 [Glycine max]
COG	YP_183830.1	2.00E-24	50S ribosomal protein L1P [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q8VZB9\|R10A1_ARATH	5.00E-122	60S ribosomal protein L10a-1
trEMBL	tr\|C6T552\|C6T552_SOYBN	2.00E-150	Ribosomal protein {ECO:0000256\|RuleBase:RU000659} (Fragment)

Sequence

Transcript Sequence

>Glyur000694s00023244.1
CTAGCTAGAGTTTTGCCTCCGGTGTGAGATCTGTTGCCGGCTAGCAGCTGATTTGAATAGCCCCAAGTATCGAAGATGAGTAAGCTCCAGAGTGATGCTTTGAGAGAAGCTATCTCAGGAATTATGGCTGATTCCAAGGAGAAGAACCGTAAATTTGTTGAGACCATTGAACTCCAGATTGGGCTAAAAAACTATGACCCACAGAAGGACAAGCGTTTTAGCGGCTCTGTCAAATTGCCCCACATTCCTCGACCCAAGATGAAAATCTGCATGCTTGGTGATGCCCAACACGTTGAAGAGGCTGAGAAGATAGGACTTGACTACATGGACGTCGAAGCCTTGAAGAAGCTAAACAAAAACAAGAAACTGGTGAAGAAACTAGCGAAAAAGTACCATGCTTTTTTAGCTTCTGAAGCAGTCATAAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAAGCAGGCAAGTGTTTCTTGTTGGGCTTTAGAAATTTGGACATTCCAAGACTATTTGGTGGGAAGTTCCCGACACTTGTTACCCACCAAGAATCTCTTGAGTCAAAGGTTAATGAGACCAAGGCCATGGTCAAATTCCAACTTAAGAAAGTGCTCTGCATGGGAGTAGCTGTAGGCAATGTCAGTATGGAGGAAAAACAAATCTTCCAAAACGTACAAATGAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAACTGGCAAAACGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAGTCGTACCGTGTCTTTTAATTTGTTTTTAATTTCAGTGAATTTCTGATTGCACTTGATATTTTGATTATTGTAATAGCTGTGACAGGTTCTTTAATCTTTCTACAGTTTTGTTGGATGAGTTTTTTGTCGTTAGTGTTTCATGTTCTTGACTCGTTTAAGTGCTTTGCAACATTTGGTAATGTTAGGGGTCCTAATTTTAAGCCCCGTTTTTACTTGCACACCTTTTTGCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00694	31202	33641	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000694s00023244.1	PF00687.16	Ribosomal_L1	21	230	1.80E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	487.198
SRR1783600	control	488.084
SRR1783602	moderate drought stress	422.745
SRR1811619	moderate drought stress	419.837

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	215.123
DRR006520	Root Summer glycyrrhizin high producing strain	212.330
DRR006521	Root Winter glycyrrhizin high producing strain	140.731
DRR006522	Root Winter glycyrrhizin high producing strain	136.990
DRR006523	Root Summer glycyrrhizin low producing strain	206.236
DRR006524	Root Summer glycyrrhizin low producing strain	205.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	547.838
SRR2868004	Drought Stress (root)	313.938
SRR2967015	Control (root)	313.199

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	164.305
SRR9715740	Leaf	180.415
SRR9715741	Leaf	155.294
SRR9715739	Root	177.671
SRR9715742	Root	236.606
SRR9715743	Root	211.130

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	575.585
SRR8749028	MeJA induced 9h	324.455
SRR8749029	MeJA induced 9h	465.875
SRR8749030	Uninduced	99.064
SRR8749031	Uninduced	75.441
SRR8749032	Uninduced	98.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	332.428
SRR8400027	Control - Root	287.349