Gene detail

Gene detail information of Glyur000694s00023243

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27510.1	1.00E-42	ferredoxin 3
NR	XP_007132438.1	5.58E-95	hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris]
COG	NP_442127.1	5.00E-45	ferredoxin [Synechocystis sp. PCC 6803]
Swissprot	tr\|P27788\|FER3_MAIZE	1.00E-66	Ferredoxin-3, chloroplastic (Precursor)
trEMBL	tr\|V7AFQ6\|V7AFQ6_PHAVU	2.00E-95	Uncharacterized protein {ECO:0000313\|EMBL:ESW04432.1}

Sequence

Transcript Sequence

>Glyur000694s00023243.1
ATGAGACGCAATTGGATGAGAAGAACTGAGCACACAGAAGCATCAGAATTGATAATCATGGCAACCTTGTCAGCTGTGAAGGTTTCCCCCTATTGCATGTCTCAAACTGCAAGCCAAAATCGGTTCACACTTGCTACCACAGTCAAGTGCCCCTCCTCTCTTGGGTCTGTGAAGACTGTTTCACGATCTTTTGGCTTGAAGTCATCCTCTTCATTTAGGGTGACTGCCATGGCTACTTACAAGGTTAAGCTGATTGGTCCAGAAGGACAAGAAAATGAGTTTGAGGCACCCGATGATGGTTACATCTTAGATTCAGCAGAGAATGCTGGAGTTGAACTTCCGTATTCATGCCGGGCTGGAGCATGCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCTGTGGATCAGTCTGATGGCTCATTCCTCGATGACAATCAAATAAAGGAAGGTTTTGTGCTGACCTGTGTGTCCTACCCAACTGCAGACTGTGTTATTCATACTCACAAAGAAGGCGATCTCTATTGAGAATTGCTGGGAAAGGAACTTGTGCCCTTGGTGGAGGAGAATGGGAATTTTAGTTAGAGTTTGCAGCCAAAATTGGCTTGTTCTGCTTTGGAATCTACCAAACTTTACACATTCAGCTATTGTTNTTGTGTTGCCTATATGGGACTTTTAAGTTATGTAGGATAATGAATTTTTGTTTGAGCCAGGAAGCTTTGTTATTAAAGATTCAGATGATATGCAGCTTTGTTTGGAATTTAAATAAACGTTTAAGTAATCTCTTTAATGACTTTTGTGTATGCACTTTTGTAACGTGTATGGATGGTGCTTTTGAGATATGGAATGGCCTTTCAATCAAGACAACCCTTGCATGGCTGCACCGTTGCTCACTTGCTTGACCTCGGATCCCTTGGGGGGAAAAGCAAAANGAAATGCTTTCTGTAATAATTTAATTACTACATTAAATCTATAATTGTGATAGGGAGAGGGAAATTTTATTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00694	27202	28733	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0022900 electron transport chain

molecular_function

GO:0009055 electron carrier activity

GO:0051536 iron-sulfur cluster binding

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000694s00023243.1	PF00111.22	Fer2	87	160	3.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	88.641
SRR1783600	control	89.277
SRR1783602	moderate drought stress	47.706
SRR1811619	moderate drought stress	49.395

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.850
DRR006520	Root Summer glycyrrhizin high producing strain	72.865
DRR006521	Root Winter glycyrrhizin high producing strain	19.901
DRR006522	Root Winter glycyrrhizin high producing strain	19.712
DRR006523	Root Summer glycyrrhizin low producing strain	117.254
DRR006524	Root Summer glycyrrhizin low producing strain	120.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	183.819
SRR2868004	Drought Stress (root)	197.285
SRR2967015	Control (root)	195.637

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.524
SRR9715740	Leaf	42.948
SRR9715741	Leaf	50.724
SRR9715739	Root	100.923
SRR9715742	Root	91.885
SRR9715743	Root	86.136

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.714
SRR8749028	MeJA induced 9h	71.889
SRR8749029	MeJA induced 9h	57.414
SRR8749030	Uninduced	81.188
SRR8749031	Uninduced	60.202
SRR8749032	Uninduced	61.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	135.794
SRR8400027	Control - Root	132.532