Gene detail

Gene detail information of Glyur000694s00023241

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27500.2	4.00E-149	Glycosyl hydrolase superfamily protein
NR	XP_006593414.1	0	PREDICTED: uncharacterized protein LOC100786020 isoform X1 [Glycine max]
Swissprot	tr\|Q9ZQG9\|E1314_ARATH	0	Glucan endo-1,3-beta-glucosidase 14 (Precursor)
trEMBL	tr\|I1M4C5\|I1M4C5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G39261.1}

Sequence

Transcript Sequence

>Glyur000694s00023241.1
ATGGCAACCTGTTCCTTCCTCTTCAGAATGCTATTGCTGCTTCTCACCATTTCGGATTTGTTTGTGCAAAGCCGTGGCCTTAATGTTGGAATCAACTATGGACAGATAGCCAACAATCTTCCATCTCCCTCTCGTGTGGCAACTCTTATAAAATCTCTTAACGTGAGCNGAATCAAGCTCTATGATGCTGATCCAAATGTTTTATCAGCATTCTCCAACTCAAACGTGGAATTCATCATAGGACTAGGAAACGAGTACCTTCAGAGTGTGAGTAAAGACCCTTCCCAGGCTCAAAGCTGGGTTCAACAACACGTTCAACCTTACATTTCACAAACCAAAATCACTTGTATTACTGTTGGAAATGAGATCTTCAATACCAATGATACACAGCTCATGAACAACCTCCTCCCAGCAATGCAAAGCGTGTACAATGCCCTTGTTAATCTTGGACTATCCCAACAAGTCACTGTCACAAGTGCTCATTCTTTCAACATTTTATCCAATTCATTCCCTCCTTCATCTGGTGCTTTTAGGCAAGATCTGATTCAATACATTCAACCCCTTCTAAGCTTTCATTCTCAAATCAAGTCACCTTTTCTCATCAATGCATATCCCTTTTTTGCATACAAGGATAACCCGGATCAAATTTCATTGAACTATGTGCTGTTTCAGCCAAATCCTGGGTCCATTGATCCAAACACCAATTTACATTATGATAACATGTTGTATGCTCAAATTGATGCTGTCTATGCNGCTATTAAGGCACTGGGGCATACAGATATTGAGGTCAGNATTTCTGAGACTGGTTGGCCTTCTAAGGGTGACCCTGATGAGGTTGGAGCCACACCACAGAATGCAGAAATATACAATACTAATTTGTTGAAGAGGATTGAGATGAAGCAAGGGACTCCTGCAAGGCCATCTGTTCCAATTGATATTTATGTCTTTGCACTCTTTAATGAGGATTTGAAGCCTGGTCCCGCATCGGAGAGAAACTATGGCCTTTATTATCCTGATGCTAACCCGGTTTATAACATTGGATTTCAGCAGCAGGGTTATCTCCCAGAAATGGTTATAGAATCCAAATCCAATGCTTTGTCCATCAATTTTCTCATCTATATTCTTACATGCTTGGGAGCTGATAAAAGCAGCATGATCCTGCACTGTTTGTACACAGCCATTGGAGCAACTTTTGGAGGATTAGTTCGTATAACTTGAAAGAACCAGTGGCAAAAAAAACACCATTCATATAATCATTGATTTCACAAATTAGAAATAATCAAGGGTAGAGATTGGATATGTAACATGGAGTACAGTGATTTTTTTGACAGAAAGTTTATATATAGAAAGTAGATTTTAGTTTTGATTTAGACAGAAAGAAAGAAAAGAAGGACTATCTGTTGCACATGAAGAAAAATTTGGGTTTTGACCTATGAGGAGGATTTTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00694	12019	16366	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000694s00023241.1	PF00332.13	Glyco_hydro_17	29	348	3.10E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.665
SRR1783600	control	9.632
SRR1783602	moderate drought stress	7.136
SRR1811619	moderate drought stress	6.669

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.481
DRR006520	Root Summer glycyrrhizin high producing strain	15.938
DRR006521	Root Winter glycyrrhizin high producing strain	10.403
DRR006522	Root Winter glycyrrhizin high producing strain	10.180
DRR006523	Root Summer glycyrrhizin low producing strain	8.461
DRR006524	Root Summer glycyrrhizin low producing strain	8.132
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.040
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.978
SRR2868004	Drought Stress (root)	18.336
SRR2967015	Control (root)	11.252

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.982
SRR9715740	Leaf	10.303
SRR9715741	Leaf	10.947
SRR9715739	Root	4.244
SRR9715742	Root	14.836
SRR9715743	Root	11.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.356
SRR8749028	MeJA induced 9h	87.917
SRR8749029	MeJA induced 9h	74.073
SRR8749030	Uninduced	134.795
SRR8749031	Uninduced	160.175
SRR8749032	Uninduced	111.400

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.197
SRR8400027	Control - Root	13.882