Gene detail information of Glyur000693s00025750 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03220.1 | 2.00E-112 | expansin A13 |
| NR | XP_004490781.1 | 3.48E-167 | PREDICTED: expansin-A13-like [Cicer arietinum] |
| Swissprot | tr|Q9M9P0|EXP13_ARATH | 1.00E-143 | Expansin-A13 (Precursor) |
| trEMBL | tr|I1JHS2|I1JHS2_SOYBN | 2.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00693 | 83299 | 86235 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000693s00025750.1 | PF03330.13 | DPBB_1 | 82 | 168 | 3.30E-18 |
| Glyur000693s00025750.1 | PF01357.16 | Pollen_allerg_1 | 180 | 257 | 1.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.369 |
| SRR1783600 | control | 29.840 |
| SRR1783602 | moderate drought stress | 23.078 |
| SRR1811619 | moderate drought stress | 22.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.102 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.380 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.417 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.729 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.285 |
| SRR2868004 | Drought Stress (root) | 18.773 |
| SRR2967015 | Control (root) | 22.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.798 |
| SRR9715740 | Leaf | 2.995 |
| SRR9715741 | Leaf | 4.139 |
| SRR9715739 | Root | 18.514 |
| SRR9715742 | Root | 25.602 |
| SRR9715743 | Root | 25.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.812 |
| SRR8749028 | MeJA induced 9h | 8.500 |
| SRR8749029 | MeJA induced 9h | 15.521 |
| SRR8749030 | Uninduced | 1.959 |
| SRR8749031 | Uninduced | 0.624 |
| SRR8749032 | Uninduced | 1.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.353 |
| SRR8400027 | Control - Root | 56.788 |