Gene detail information of Glyur000692s00016557 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23710.1 | 4.00E-72 | Tic22-like family protein |
| NR | XP_004504382.1 | 1.00E-136 | PREDICTED: protein TIC 22-like, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|F4J469|TI22L_ARATH | 1.00E-90 | Protein TIC 22-like, chloroplastic (Precursor) |
| trEMBL | tr|A0A072TUW1|A0A072TUW1_MEDTR | 2.00E-134 | Tic22 family protein {ECO:0000313|EMBL:KEH20643.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00692 | 89477 | 93712 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000692s00016557.1 | PF04278.7 | Tic22 | 52 | 257 | 1.10E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.729 |
| SRR1783600 | control | 23.752 |
| SRR1783602 | moderate drought stress | 25.436 |
| SRR1811619 | moderate drought stress | 25.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.484 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.490 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.998 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.446 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.722 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.095 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.458 |
| SRR2868004 | Drought Stress (root) | 21.970 |
| SRR2967015 | Control (root) | 21.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.902 |
| SRR9715740 | Leaf | 26.748 |
| SRR9715741 | Leaf | 18.840 |
| SRR9715739 | Root | 7.939 |
| SRR9715742 | Root | 9.605 |
| SRR9715743 | Root | 9.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 93.863 |
| SRR8749028 | MeJA induced 9h | 43.146 |
| SRR8749029 | MeJA induced 9h | 97.284 |
| SRR8749030 | Uninduced | 31.455 |
| SRR8749031 | Uninduced | 35.723 |
| SRR8749032 | Uninduced | 40.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.179 |
| SRR8400027 | Control - Root | 20.667 |