Gene detail information of Glyur000692s00016555 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14200.1 | 1.00E-19 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KHN12361.1 | 0 | hypothetical protein glysoja_018491 [Glycine soja] |
| trEMBL | tr|K7L5Y4|K7L5Y4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G11280.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00692 | 77164 | 82155 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.943 |
| SRR1783600 | control | 16.989 |
| SRR1783602 | moderate drought stress | 15.685 |
| SRR1811619 | moderate drought stress | 15.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.662 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.685 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.602 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.591 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.790 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.160 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.213 |
| SRR2868004 | Drought Stress (root) | 27.803 |
| SRR2967015 | Control (root) | 27.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.667 |
| SRR9715740 | Leaf | 3.234 |
| SRR9715741 | Leaf | 1.981 |
| SRR9715739 | Root | 2.997 |
| SRR9715742 | Root | 14.382 |
| SRR9715743 | Root | 13.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.248 |
| SRR8749028 | MeJA induced 9h | 7.666 |
| SRR8749029 | MeJA induced 9h | 16.714 |
| SRR8749030 | Uninduced | 0.956 |
| SRR8749031 | Uninduced | 1.272 |
| SRR8749032 | Uninduced | 3.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.258 |
| SRR8400027 | Control - Root | 23.769 |