Gene detail

Gene detail information of Glyur000692s00016547

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G27270.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004504387.1	PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O04647\|PP399_ARATH	Pentatricopeptide repeat-containing protein At5g27270
trEMBL	tr\|A0A072TTV8\|A0A072TTV8_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:KEH20631.1}

Sequence

Transcript Sequence

>Glyur000692s00016547.1
ATGGATATCCTCCCCTCCACATTTGTACTGAAGCTACCTGGAAGAATAGAGATTCATACAAATGGAACGACAAAGACAAAGAAGAAGAAACTCATTCGCATTCACTCGTCTTCGGTGCAACGCGACGACCCTTGGTCCCCCAGAGAGGGAGACCCCAGAAAACCGAAGAACCCTCTCTCGGACGACAACGCCCCGGCGCATCATCAAGGCCAAGGCCCAATACCTGAGTGTTCATCGGAGGAACCAGGGCCCACAGGCCATAACCCTCGGTGGATCAAGAGGACCCCCGAGCAGATGGTTCAGTACCTGCAGGACGACCGCAACGGCCACTTGTACGGCAAGCACGTGGTGGCCGCCATCAAGAAGGTGCGTGCCCTCACGCGCGTACCCGACGGTGACTATGACATGAGGATGGTCATGGCTTCCTTTGTTGGTAAGCTCACCTTCAAGGAGATGTGTGTCGTCCTCAAGGAGCAAAAAGGGTGGAGGCAAGTTAGAGACTTCTTTGCTTGGATGAAATTGCAGCTGGGCTACCGTCCGAGTGTTATTGTCTACACGATAGTTTTGCGCCTGTATGGGCAAGTTGGAAAGCTGAAACAGGCTGAAGAGGTCTTCTTGGAGATGCTTGATGCAGGTTGTGAACCTGATGAAGTTGCTTGTGGTACCATGCTCTGTTCGTATGCCAGATGGGGACGCCATAAGGCTATGTTGTCTTTTTATTCAGCCGTAAAAGAAAGGGGAATCATTCTCTCTGTTGCTGTCTTCAACTTCATGTTGTCATCTTTGCAAAAGAAATCACTTCATGGAGAGGTTGTACAGGTGTGGAGGGATATGGTAGGAAAAGGGGTGGTGCCCAATGATTTTACTTATACGATAGTCATTAGCTCTCTCGTCAAAGAAGGGTTGCACAAAGATGCTCTCAAGACTTTTGAGGAGATGAAGAATAATGGATGTGTCCCCGAGGAGGTAACTTACGGCTTGCTTATAAATTTAAATGCTAAAAATGGNAACAGAAATGAAGTGCAAAGACTGTGTGACGATATGAGGTTTCGAGGAATAACTCCTAGTAATTACACTTGTGCAACACTTATATCTTTGTATTACAAATATGAGGACTACCCTAGAGCTCTCTNGCTCTTTTCAGAAATGGCAAGAAACAAAACTCCAGTTGATGAAGTCATATACGGTTTGCTTATAAGAATTTATGGAAAGCTTGGTTTATACAGGGATGCTTGCAAAACATTTGAAGAGACAAAGCAGCTAGGCCTACTCACCAATGAGAAAACATATTTGGCAATGGCACAAGTCCATCTTACTGCGGGAAATGTGAACAAAGCTTTGGAAGTTATTGAACTCATGAAGTCGAGCAACCTATGGTTCTCTCGATTTGCTTATATTGTCCTGCTGCAATGTTATGTGACGAAAGAAGATGTTGTATCTGCTGAAGGAACATTCTTAGCTCTATGCAAGACAGGACTGCCTGATGCTGGCTCTTGTAATGATATGCTCAATCTGTATGTGGGACTTAATTTGATGCACAAGGCAAAGGAGTTTATTGCCCGAATAAGGGAGGACGGGACACATTTTGATGAGGAGCTTTATAGGACAATTATGAAGGTTTACTGCAAGGAGGGAATGCTGCCAGAAGCCGAGCAGCTGACCAATCAAATGGTTAAGAATGAATCTGTTAAATATTATAAATTCTTCCAGACATTTTATTGGGTTCTCTGTGAACATAAGGAGGATGCACAATCTGATGATAAACTCGTGGCCATTGAGCCTATGGACAAACTTGACACTACAGCTCTTGGGATGATGCTCAGTTTATATCTGACAAATGACAATTTAAGTAAGACAAAAATATTACTGAAACTATTGCTGGGTTATGCCGGGGGATCAAAAATTGTTAGTCAGTTCATCATCAGCTTGACTAGAGATGGAGAAATCAGCAAAGCAGAATCACTCAACTATCAATTAATTACGCTTGGCTGCAGAATGGAAGAAGCCACTGTGGCTTCTTTAATTAGCCATTATGGCAAACAACATATGCTGAAACAAGCTGAAGATATCTTTGCAGAATATGAAGGGCGTGATTTGGGTGCTGTTGGAATTAGCATCGTTGTAAATGCTTTGACCAATGGAGGAAAACATCAGGAGGCTGAGAAGATTATCTCCCGGANTCTTGAAGAAAACTTGGACCTTGATACCGTGGCTTATAATACTTTTATCAAATCCNTGCTGGAAGCAGGCAAGTTGCATTTTGCATCTAGTATTTTTGAGCGCATGTGTTCCTCTGGTGTTGCTCCATCAATTCAAACATATAACACAATGATAAGTGTCTATGGACAAGATCAAAAGTTGGATAGAGCTGTGGAGATGTTCGAGAAAGCTCGCTCATTGGGTGTCCCTTTGGACGAAAAAACATGCATGAATTTGATAGGCTATTATGGGAAAGCTGGTATGATGCACGAAGCTTCACAGTTGTTCAGTAAAATGCAGGAAGAAGGGATTAAACCTGGAAAGGTCAGCTATAATATTATGATCCATGTATATGCAAATGCCGGAGTTCATCATGAAGTAGAGAAACTTTTCCAGGCCATGCAGAGACAAGGTTGTTTGCCTGACTCTTTTACTTATCTCTCCCTTGTCCAAGCATATACGGAGAGCCTAAATTACTCTAAAGCTGAGGAAACCATACATGCTATGCAGAGCAAGGGCATTCCACCATCTTGTGCCCATTTCAATATTTTACTNTCTGCATTCACAAAAGCTGGGCTGATTGATGAAGCCAAGAGGGTTTATAAGGGACTATCAACTTTTGGTTTAATTCCTGATCTCATATGTTACCGAACAATGCTGAAAGGTTACNTGAGATATGGGTGCGTGGAAGAAGGAATCAACTTTTTCGAAAGTATATGCAAGTCAACAAAAGGAGACAGGTTCATCATGAGTGCAGCTGTGCATTTATACAAATCTGTGGGAATGGAAAGCCAGGCTAAAGAAATATTGAGTTCAATGAACAAGATGAGGATCCCTTTCCTTAGGAAACTTGAAGTTGGAATGGCAACAACAATAGCAACAACAACCAAGCCTTATCCCACTTGAAGTTGGAACGGCAGAGAGAGTGAAAATCCCTCNAGAAATATATGTGCGCACACATGATGACGGAAAATGGTTGGTTTTTACCATGGAACATGTATATAATTTAATCAACCTGGTAATGGTGATGGTGGAAGCCTGATGATAGCTGCATATACGTTTGCTGGCAATGATGATTGGACTCGTAGTTCAGAATGTACTTCTGCCAGTAATGATGAGGACCTGATCCACGTTCACTGTAAGTGATTGACTCAATTGANTCTGAATATGCCAAAAAAGTTCCGATACTCAATACCAACCAACTAAAGATAGTTGACCCAAGAATAAACAGTGCAACTATCAAAGGACCTGGAATACATATAGGGGTTTGTTTAGTGAGGTTTACTTGTGAAAATTTATTTGGCCGGACCGTAACAGGTCCAAGAATTTT

Protein Sequence

>Glyur000692s00016547.1
MDILPSTFVLKLPGRIEIHTNGTTKTKKKKLIRIHSSSVQRDDPWSPREGDPRKPKNPLSDDNAPAHHQGQGPIPECSSEEPGPTGHNPRWIKRTPEQMVQYLQDDRNGHLYGKHVVAAIKKVRALTRVPDGDYDMRMVMASFVGKLTFKEMCVVLKEQKGWRQVRDFFAWMKLQLGYRPSVIVYTIVLRLYGQVGKLKQAEEVFLEMLDAGCEPDEVACGTMLCSYARWGRHKAMLSFYSAVKERGIILSVAVFNFMLSSLQKKSLHGEVVQVWRDMVGKGVVPNDFTYTIVISSLVKEGLHKDALKTFEEMKNNGCVPEEVTYGLLINLNAKNGNRNEVQRLCDDMRFRGITPSNYTCATLISLYYKYEDYPRALXLFSEMARNKTPVDEVIYGLLIRIYGKLGLYRDACKTFEETKQLGLLTNEKTYLAMAQVHLTAGNVNKALEVIELMKSSNLWFSRFAYIVLLQCYVTKEDVVSAEGTFLALCKTGLPDAGSCNDMLNLYVGLNLMHKAKEFIARIREDGTHFDEELYRTIMKVYCKEGMLPEAEQLTNQMVKNESVKYYKFFQTFYWVLCEHKEDAQSDDKLVAIEPMDKLDTTALGMMLSLYLTNDNLSKTKILLKLLLGYAGGSKIVSQFIISLTRDGEISKAESLNYQLITLGCRMEEATVASLISHYGKQHMLKQAEDIFAEYEGRDLGAVGISIVVNALTNGGKHQEAEKIISRXLEENLDLDTVAYNTFIKSXLEAGKLHFASSIFERMCSSGVAPSIQTYNTMISVYGQDQKLDRAVEMFEKARSLGVPLDEKTCMNLIGYYGKAGMMHEASQLFSKMQEEGIKPGKVSYNIMIHVYANAGVHHEVEKLFQAMQRQGCLPDSFTYLSLVQAYTESLNYSKAEETIHAMQSKGIPPSCAHFNILLSAFTKAGLIDEAKRVYKGLSTFGLIPDLICYRTMLKGYXRYGCVEEGINFFESICKSTKGDRFIMSAAVHLYKSVGMESQAKEILSSMNKMRIPFLRKLEVGMATTIATTTKPYPT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00692	52218	57699	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000692s00016547.1	PF13041.1	PPR_2	180	227	1.10E-08
Glyur000692s00016547.1	PF01535.15	PPR	254	283	1.1
Glyur000692s00016547.1	PF13041.1	PPR_2	290	330	7.70E-10
Glyur000692s00016547.1	PF01535.15	PPR	359	386	0.19
Glyur000692s00016547.1	PF01535.15	PPR	393	423	0.0056
Glyur000692s00016547.1	PF01535.15	PPR	429	457	0.11
Glyur000692s00016547.1	PF01535.15	PPR	534	560	0.00056
Glyur000692s00016547.1	PF13041.1	PPR_2	735	780	1.30E-10
Glyur000692s00016547.1	PF01535.15	PPR	808	837	6.30E-05
Glyur000692s00016547.1	PF13041.1	PPR_2	839	886	2.20E-11
Glyur000692s00016547.1	PF01535.15	PPR	914	938	0.0044
Glyur000692s00016547.1	PF01535.15	PPR	948	973	0.14
Glyur000692s00016547.2	PF13041.1	PPR_2	180	227	1.20E-08
Glyur000692s00016547.2	PF13041.1	PPR_2	288	330	6.40E-11
Glyur000692s00016547.2	PF01535.15	PPR	359	386	0.19
Glyur000692s00016547.2	PF01535.15	PPR	393	423	0.0059
Glyur000692s00016547.2	PF01535.15	PPR	429	457	0.12
Glyur000692s00016547.2	PF01535.15	PPR	534	560	0.00058
Glyur000692s00016547.2	PF01535.15	PPR	705	732	0.0035
Glyur000692s00016547.2	PF13041.1	PPR_2	771	815	3.40E-10
Glyur000692s00016547.2	PF01535.15	PPR	844	873	6.50E-05
Glyur000692s00016547.2	PF13041.1	PPR_2	875	922	2.30E-11
Glyur000692s00016547.2	PF01535.15	PPR	950	974	0.0046
Glyur000692s00016547.2	PF01535.15	PPR	984	1009	0.15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.760
SRR1783600	control	1.844
SRR1783602	moderate drought stress	4.117
SRR1811619	moderate drought stress	3.995

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.952
DRR006520	Root Summer glycyrrhizin high producing strain	3.856
DRR006521	Root Winter glycyrrhizin high producing strain	3.822
DRR006522	Root Winter glycyrrhizin high producing strain	3.585
DRR006523	Root Summer glycyrrhizin low producing strain	3.749
DRR006524	Root Summer glycyrrhizin low producing strain	3.805
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.805
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.114
SRR2868004	Drought Stress (root)	8.677
SRR2967015	Control (root)	11.247

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.703
SRR9715740	Leaf	14.278
SRR9715741	Leaf	11.530
SRR9715739	Root	0.182
SRR9715742	Root	2.974
SRR9715743	Root	2.090

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.015
SRR8749028	MeJA induced 9h	5.960
SRR8749029	MeJA induced 9h	4.519
SRR8749030	Uninduced	2.968
SRR8749031	Uninduced	1.710
SRR8749032	Uninduced	3.676

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.379
SRR8400027	Control - Root	6.847