Gene detail

Gene detail information of Glyur000692s00016545

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23670.1	3.00E-175	phragmoplast-associated kinesin-related protein, putative
NR	KEH20628.1	0	phragmoplast-associated kinesin-related protein [Medicago truncatula]
Swissprot	tr\|Q8L7Y8\|KN12B_ARATH	0	Kinesin-like protein KIN12B
trEMBL	tr\|A0A072TUU7\|A0A072TUU7_MEDTR	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000692s00016545.1
ATGAAGCACTCCACGCTGCAAAGAAATGCAATCTCGCGCGACACTCACACTCCTTCCCCCGCCAAACCCAGACCCATTCGAAAGCACAAANCCCCAACACCCTCCAAGGACAAAGAGAACGACCCTCCTCCTCCTATGAGGAACCTCTTGCCCCCTAGGCCTCCCTCTTCCTCTTCCAACGTTCCAAACCCTCTCAAGCGCAAGCTCTCTTCCCTTCCCGACTCTTCTCTTCCCTCAACCTCCTCCGATTCCGGCGTCAAGGTAGATATTTTTGAGCTTGTTGGGGTGCCCCTTGTGGAGAATTGCCTGGCTGGGTTCAATAGTTCCGTGTTCGCATATGGGCAGACTGGGAGTGGAAAGACATACACCATGTGGGGTCCTCCCAATGCCTTGTCGGATGACGATACAACAGATGACCAACAAGGCCTCGCGCCTCGCGTTTTCGAGCGACTATTTGCTCGCATAAATGAAGAGCAAACTAAGCATTCTGACGAGCAACTCAAGTATCAATGCCACTGTTCTTTTCTTGAGATATACAACGAGCAAATAACAGATCTGTTAGATCCGAATAAAAGAAACCTACAGATTAGAGAAGATGTCAAATCTGGAGTCTATGTTGAAAATCTTACAGAGGAGCATGTGTGTACAATGAAGGATGGATTGTTAAACAGGAGAGTAGGTGCAACCAGTATAAATTCTGAAAGTTCCCGTTCACATACTGTTTTTACTTGTGTTGTTGAATCTCGATGCAAGAGCATCGCAGATGGTATAAGCAGATTTAAAACAAGTAAAATCAACCTTGTTGATTTAGCAGGGAATTTGATCAACATTCTTGCTGAAGTTTCTCAAACAGGAAAGCAGCGGCATATACCATATAGAGACTCCAGGCTGACATTTTTATTGCAGGAGTCTCTTGGAGGAAATGCAAAATTAGCATTGGTTTGTGCTATTTCCCCAGCACAAAGTTGTAGGAGTGAAACTTTTAGTACATTGAGATTTGCACAACGTGTCAAAGCTATCAAGAACAAAGCAGTTGTTAATGAAGTAATGCATGAGGATGTGAACCAATTGCGAGAAGTGATACGTCAACTCAAAGATGAACTGCATCAAATTAAAACAAACGGTTACAGCCCAAGTGATGGAAGTGGAGGTCATTCAGCAGCTTGGATCCGAAGAAGTTTGAATTTATTGCAGTCTAGCCTCAATCGCCCATTATCACTTCCTCATGTTGATGATGATGGTGATGAGGTGATGGAGATTGACGAGGAAGGTGTTGAGGACCAGGCTGTAGTTCTCCCCAATTCCAGNGAAGGCATTGTTGGTTTTTCTGCCACCAAGGGATCCGTTGATTTTCCCAGTGCTGCAATGAATTGCAATAATCCTGCTAGCCTCAGCATTGTCCAATGCNATACATCCCCCATCCTCAAATCCCCAACTCCCAGTGTTTTGCCAACAATCAGCAGCAGCAGGAAAAGTTTGAAGACCTCATTAAAGCTGTCTCCATCTGAAAGTAATCTTCATAGTGAAAGTGACTTNGACACAAATACTATTAATCAGAAAAGCGTATCTAATGCTCTGTCTAGTCAGACAGCTCCAAATTTCCTTACTAAAACTGAAAATTTAGCACTAAGCATCCGCCATGGTCTTGAAATTATTGATAGCCGCTGTCATGGTGCAGCTCTGGGTAAGTCATCATTGAGGCTCCCATCAAGACCTAAAGATTCCAGGCTAATTTTTCCAGTGGACAAAGTTGATGTGGGAGTGCAGACTTTTCTCAATGATAATGCCAGAGAAGAAGATTCTGTTGTGTTTCCCTGTAATAACTGCAAAAGCAGAATGCAGCTTGATGTCAATAACTCAAACATGCAATTGGTNCCTGCTGATTGCCCTGAGTCTGCTGATAAGCCAAAGAAGCAAGTTCTCAAAGCAGCAGAGAAGGTTTTGGCAGGATCCATAAGGAGAGAAATGGCACTGGAAGAGTTTTGTGCAAAGCAGACTTCTGAGATAATGCAGCTTAATTACTTATTGCAACAGTACAAGTATGAGAGGGAATGCAGTGCCATAATAGCACAGACAAGGGAAGATAAAATTCTTCGCCTTGAGAGCCTTATGGATGGTGTTTTGCCCACTGAGGAATTCATGAACGAAGAGCTGGTGTCCCTCACACATGAACACAAGCTTTTGAAGGAGNACTATGAGCATCATCCGGAAGTTCTGAAGATGAAGATAGAGTTAAAAAGAGNACAAGATGAGCTACAAGAGTATCATAATTTCTATAAATTTGGGGAGAGGGAAGTGTTGATGGAAGAGATATGTAGTTTAAGAAATCAGCTTNACTTTTATATAGATTCTTCATCCACGTCTGCAAGAAAGCAATGTCCGCTATTGCAATCTGAACCCAGGTTGGCAGAAAACCTCACTGCCGTTCCNGATTCAACTGAGGCTAGCGCTGAGGCAAATACAAATCCAGAATCAACTGAAGACAGTGCCAAAGTAAAACTTGAAATGGAAAGAAGTCAATGGACTGAAGCAGAAAGCAGGTGGATTTCTCTTTCTGAAGAATTGAGAGCTGAAGTTGAAGCTAATAGGTCATTAGCTGAAAAGAGGAAGCAGGAAGTAGATGCTGAGAGGAAGTGTACCAAGGAACTGAAGGAAGCAATGCAAATAGCTATAGAAGGCCATGCACGGATTTTAGAACAGTATGCAGATTTGGAAGAGAAACATATNCAATTGCTTGAAAGGCATAGAAAGATCCTGGATGGAATTGANGATGTCAAGAAAGTGGCTTCCAGAGCAGGAGTAAGAGGTGAAGAGTCTAAATTAATAAATGCCCTTGCTGCAGAAATTTCAGCATTAAAAGCAGAAAGAGAAAAGGAAAGGCGAATCCTAATAGATGAAAATAGAGGGCTTCAGGCTCAACTGAATGATACTGCTGAAGCAGTGCAAGCTGCAGGTGAGCTTCTTGTGCAGCTTAAAGAAGCTGAAGAAGGTGTCGTTACCGCACAGAAGCGGGCAATGGATGCAGAGCAAGAAGCTGCAAAGGCCTACAAACAAATTGACAAATTGAAGAAGAAACACGAGAAGGAGATTAGCACACTTAATGGGCTCCTTGCCAAAACATGTTTGCCTGAGGAAGCAATACAACCTACTGATAATGATTTTGTCATGCCTACTTATGATGACACCAAGGTACCACAGAGTGTTAATAATCAACTTGAGCGATTTTATAATGAAGAGGATAGTGAGCTTGCAAAATTAGCAGAACAATCATGGTTCTCTGGTTATGATAGATGCAACATATAG

Protein Sequence

>Glyur000692s00016545.1
MKHSTLQRNAISRDTHTPSPAKPRPIRKHKXPTPSKDKENDPPPPMRNLLPPRPPSSSSNVPNPLKRKLSSLPDSSLPSTSSDSGVKVDIFELVGVPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPPNALSDDDTTDDQQGLAPRVFERLFARINEEQTKHSDEQLKYQCHCSFLEIYNEQITDLLDPNKRNLQIREDVKSGVYVENLTEEHVCTMKDGLLNRRVGATSINSESSRSHTVFTCVVESRCKSIADGISRFKTSKINLVDLAGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLALVCAISPAQSCRSETFSTLRFAQRVKAIKNKAVVNEVMHEDVNQLREVIRQLKDELHQIKTNGYSPSDGSGGHSAAWIRRSLNLLQSSLNRPLSLPHVDDDGDEVMEIDEEGVEDQAVVLPNSXEGIVGFSATKGSVDFPSAAMNCNNPASLSIVQCXTSPILKSPTPSVLPTISSSRKSLKTSLKLSPSESNLHSESDXDTNTINQKSVSNALSSQTAPNFLTKTENLALSIRHGLEIIDSRCHGAALGKSSLRLPSRPKDSRLIFPVDKVDVGVQTFLNDNAREEDSVVFPCNNCKSRMQLDVNNSNMQLVPADCPESADKPKKQVLKAAEKVLAGSIRREMALEEFCAKQTSEIMQLNYLLQQYKYERECSAIIAQTREDKILRLESLMDGVLPTEEFMNEELVSLTHEHKLLKEXYEHHPEVLKMKIELKRXQDELQEYHNFYKFGEREVLMEEICSLRNQLXFYIDSSSTSARKQCPLLQSEPRLAENLTAVPDSTEASAEANTNPESTEDSAKVKLEMERSQWTEAESRWISLSEELRAEVEANRSLAEKRKQEVDAERKCTKELKEAMQIAIEGHARILEQYADLEEKHXQLLERHRKILDGIXDVKKVASRAGVRGEESKLINALAAEISALKAEREKERRILIDENRGLQAQLNDTAEAVQAAGELLVQLKEAEEGVVTAQKRAMDAEQEAAKAYKQIDKLKKKHEKEISTLNGLLAKTCLPEEAIQPTDNDFVMPTYDDTKVPQSVNNQLERFYNEEDSELAKLAEQSWFSGYDRCNI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00692	39725	45760	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000692s00016545.1	PF00225.18	Kinesin	87	273	1.90E-53
Glyur000692s00016545.1	PF00225.18	Kinesin	274	340	6.70E-21
Glyur000692s00016545.1	PF06548.6	Kinesin-related	537	1042	8.20E-174

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.326
SRR1783600	control	0.365
SRR1783602	moderate drought stress	0.568
SRR1811619	moderate drought stress	0.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.820
DRR006520	Root Summer glycyrrhizin high producing strain	2.827
DRR006521	Root Winter glycyrrhizin high producing strain	1.519
DRR006522	Root Winter glycyrrhizin high producing strain	1.491
DRR006523	Root Summer glycyrrhizin low producing strain	1.294
DRR006524	Root Summer glycyrrhizin low producing strain	1.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.753

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.886
SRR2868004	Drought Stress (root)	3.586
SRR2967015	Control (root)	3.912

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.737
SRR9715740	Leaf	0.561
SRR9715741	Leaf	0.806
SRR9715739	Root	0.109
SRR9715742	Root	1.391
SRR9715743	Root	1.315

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.615
SRR8749028	MeJA induced 9h	3.294
SRR8749029	MeJA induced 9h	3.240
SRR8749030	Uninduced	0.760
SRR8749031	Uninduced	0.276
SRR8749032	Uninduced	0.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.773
SRR8400027	Control - Root	4.592