Gene detail

Gene detail information of Glyur000692s00016540

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07880.1	3.00E-60	Immunoglobulin E-set superfamily protein
NR	XP_003524909.1	2.93E-138	PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	1.00E-88	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|I1K3P3\|I1K3P3_SOYBN	1.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G28170.1}

Sequence

Transcript Sequence

>Glyur000692s00016540.1
CGTTACCATTTCATTTCTAGGCCCCACATTCGCCGTGTGCTACTGTTCTCTTCCCTCAAATCTAATCTTTTGTATAGTTGCATACACATTCCAAAACAACACACACACCCCATTTCTGAACTGAAGTTGCAAGTTGATTCTATCTTGTTTCTGTTTCGGAGGTTGACAATAATGTCTGCTGCTGTAGGAGCTGTGTCCGCAACCAAAGGTGTTCCCTTTAATGCTCATTTGGAGGAAGACCACAAAAACAACAACGTTGGTGGGGAACCAGACCAGCTCCCTTATGATGATACTGCTGAGGAAACTGAGGCAGAGGAAGACTCCAAGTTGGAATTGGATCTTGGCCCTCAGTTTTCCATCAAGGAACAGCTTGACAAAGATAAAGATGATGAAAGTTTGAGGAAATGGAAAGAGCAACTTCTTGGAAATGTTGATATGTCTGCTGTTGGAGAGAAAATAGAGCCAGAAGTGAAGATAGTGAGCCTCACCATTATATGCCCAGGCAGGCCTGACCTCATCCTGCCAATTCCATTCACTACTGATTCCAAAAAGAGTATCTTCACCCTTAAGGAAGGAAGCCAATACCGCCTGAAATTCTCCTTCACTGTCTCCAACAACATCGTTTCTGGCCTCAAATACACCAATGTTGTTTGGAAAACTGGGGTTAGAGTGGACAATACCAAAAAAATGTTGGGAACTTATAGNCCACAGCAGGAACCATATACATATGAATTGGAAGAAGAAACTACCCCTTCAGGCTTGTTTGCTAGGGGAACCTATTCAGCAAGAACCAAGTTTGTAGATGATGATCGCAAATGCTACTTGGATGCCAGTTACCACTTTGAAATTCAGAAGAATTGGCCTACATCCCACTGAGATTCAATCTTAAGTTAATTTATTGGTGGATTTTCTTCCTCTGTCAATTTTGTATNTTTATTATGGGAAATCCAACTTTATGTTTATTAAATCCAGTTAATGCAGTTGTGCACATGCATATCTTCCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00692	25664	27571	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005094 Rho GDP-dissociation inhibitor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000692s00016540.1	PF02115.12	Rho_GDI	99	286	4.60E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.691
SRR1783600	control	0.743
SRR1783602	moderate drought stress	0.833
SRR1811619	moderate drought stress	0.790

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.923
DRR006520	Root Summer glycyrrhizin high producing strain	2.033
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.987
DRR006524	Root Summer glycyrrhizin low producing strain	4.293
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.685

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.057
SRR2868004	Drought Stress (root)	11.147
SRR2967015	Control (root)	9.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.300
SRR9715740	Leaf	36.490
SRR9715741	Leaf	34.745
SRR9715739	Root	0.307
SRR9715742	Root	0.481
SRR9715743	Root	0.305

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.548
SRR8749028	MeJA induced 9h	3.679
SRR8749029	MeJA induced 9h	4.035
SRR8749030	Uninduced	1.823
SRR8749031	Uninduced	0.634
SRR8749032	Uninduced	0.740

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.948
SRR8400027	Control - Root	6.111