Gene detail

Gene detail information of Glyur000692s00016539.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10830.1	7.00E-138	15-cis-zeta-carotene isomerase
NR	XP_003630499.1	0	hypothetical protein MTR_8g097190 [Medicago truncatula]
COG	YP_007054308.1	7.00E-97	hypothetical protein Riv7116_1190 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9SAC0\|ZCIS_ARATH	1.00E-173	15-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBL	tr\|G7LHB2\|G7LHB2_MEDTR	0	15-cis-zeta-carotene isomerase {ECO:0000313\|EMBL:AET04975.1}

Sequence

Transcript Sequence

>Glyur000692s00016539.1
CTTGAATTCAGGTATTTGTTACTACTTTTTTCCACGCCGAAATTGGCATAACGGATCAAACTATCTTCCAATTCCGCGTTCCCATCATCACACACCGTTCCACTCACGCACTCCAAAACACCAACCCCCAAGCATAACCTTCTCCAGATGCTCTCTTTCAACACACCCGCCACGCACGCACGCACTCCACACACACACACTGACACACATAGCATGAAGTTGAGTTGAGTAAAAGCTCATTTATTTGCTGGAGGAGAGTCACTCAGCAGAGTCTTGAAGTCCGAAACATGGCTTCACCTCTCGTGTTGTTCCCTTCCATACCCCACCACCACACTTCCCACAATAAAACACCTCATCGTCATCATCATAATCGATCCCTTCAATATTCTCTGCCACTATCATTTTCACCCTCTAAACCAAAACAGAGTTGCTTCTCCCAGTTCCCTTCAAAGCCATTCCTGTTTCCTCGGAAACTCATCGCACGTGTCTCTTCTTCTGCTGGAGAAGACCATGCTGATGACGACGACACCACCGGAGATTCAGGCTTGGTGGGAGAGGACTCTGCCGCGTTTGACCTTCAGAATCAGAAAATATCTTCCTGGCTTTACTTCACCGCAATCTTGGGAGTGGTGCTCTTCGTTCTCAACGTGGCATGGATTGATGCTTCAACTGGGTTCGGTAAGCCCTTTGTTGATGCCATTTCAGGGATTTCAGATAGTCACGAGGTGATAATGTTGGTCCTGATTCTCATATTTGCAAGTGTCCACAGTGGCCTGGCCAGCTTCCGTGACACTGGTGAGAAACTCATTGGAGAAAGAGCTTACCGTGTTCTTTTTGCAGGGACNTCATTACCTTTGGCTGTAACCACCATTGTGTATTTTATTAATCATAGATATGATGGACTCCAGCTCTGGCAGCTCCAAAATGTTCCTGGGGTTCATCAACTTGTGTGGCTTTCTAACTTCATCTCCTTCCTTTTACTATATCCTTCAACCTTTAATCTTTTAGAGGTTGCAGCAGTTGACAAGCCTAAATTACATCTCTGGGAAACTGGGATCATAAGAATAACCAGGCATCCACAGATGGTTGGGCAGGTTATATGGTGTCTTGCTCATACAGTTTGGATTGGAAATTCTGTGACTGGTGCAGCTTCAATTGGCTTAATTGCACATCATTTATTTGGTGTTTGGAATGGAGACAGGCGTCTGGCTAAAAGATATGGGAAAGATTTTGAGATAGTTAAGAGTCGAACAAGTATTGTCCCTTTTGCAGCAATCCTTGATGGCAGACAAAGGTTGCCTAANGATTTCTACAAGGAGTTTATTCGATTACCATACTTTACCATCACTACCATAACATTAGGAGCTTACTTTGCACATCCGCTTATGCAGGGAGCTAGTTTCAAGCTTCATTGGTAGGTCCAACCGATTCTGATGTTACAATTAAAATTTTATGTGTAGAAGATAGATACTAACGCCACGGCTGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00692	22074	25072	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15744	Z-ISO	EC:5.2.1.12	Carotenoid biosynthesis	map00906

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000692s00016539.1	PF07298.6	NnrU	149	371	6.00E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.934
SRR1783600	control	5.688
SRR1783602	moderate drought stress	3.434
SRR1811619	moderate drought stress	3.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.004
DRR006520	Root Summer glycyrrhizin high producing strain	8.601
DRR006521	Root Winter glycyrrhizin high producing strain	1.573
DRR006522	Root Winter glycyrrhizin high producing strain	1.532
DRR006523	Root Summer glycyrrhizin low producing strain	9.068
DRR006524	Root Summer glycyrrhizin low producing strain	9.204
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.416

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.629
SRR2868004	Drought Stress (root)	20.520
SRR2967015	Control (root)	15.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.945
SRR9715740	Leaf	16.891
SRR9715741	Leaf	17.001
SRR9715739	Root	5.696
SRR9715742	Root	10.759
SRR9715743	Root	9.232

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.474
SRR8749028	MeJA induced 9h	17.178
SRR8749029	MeJA induced 9h	18.746
SRR8749030	Uninduced	9.609
SRR8749031	Uninduced	2.115
SRR8749032	Uninduced	1.250

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.285
SRR8400027	Control - Root	8.222