Gene detail

Gene detail information of Glyur000691s00031271.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01840.1	2.00E-114	Protein kinase superfamily protein
NR	KHN24899.1	0	Receptor-like serine/threonine-protein kinase NCRK [Glycine soja]
COG	YP_005004992.1	8.00E-15	phosphotransferase enzyme family protein [Pediococcus claussenii ATCC BAA-344]
Swissprot	tr\|Q9SGI7\|LYK2_ARATH	2.00E-148	Protein LYK2 (Precursor)
trEMBL	tr\|I1N7P2\|I1N7P2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G25260.1}

Sequence

Transcript Sequence

>Glyur000691s00031271.1
ATGATCATTACATTCCACATGAGAGCTTTGGTTTTATTCCTTTGGCTGTTTGTCCCTTCATTGGGTAAANACCTGCTAAGCTGTGACACAACATCACCACATGCATCTGGCTACTACCATTGCAATGCAAAAGAGTACTCACAAAAAAGCCATTGTGGAACACTTGCACTATTTCTCACCAACTCTTACTACTCATCACTTTCCAACCTCACCTTATACTTGGGACTCAACCGTTTTGTTATAGCAGAAGCCAATGGTTTCTCAGCAGAAACTGAGTTCCTTCCACAGGACCAACCCCTTTTGATACCAATTGATTGCAAGTGCAAAGGTGGTTTTTTTCAGGCTGAATTAACCAAAACCACTCTCAAAGGAGAGAGCTTTTATGGCATTGCTCAATCACTAGAAGGCTTGACAACCTGCAAGGCTATAAAGGACAACAACCCAGGTGTGTTTTCACCTTGGAACCTTGATGGTAATCTCAGATTGGTTCTCCCATTGAGATGTGCTTGCCCATTTTCTTCTCAAGTTAGACCACAACCAAAGATTCTTCTTTCTTATCCTGTAAGTGAAGGTGATACAGTTTCCAAATTGGCCTCAAAGTTCAATGTTACAGAAGAAGCTATTGTTTCTGCTAATAACATATCATCATCACAAGGCCTTAGAAGAAGAACTATAAGCCTAGAACCTTATACCTCAATTCTAATACCATTGAATGATAACCCTGTCTTTGGTCCTTTTGCTAAACCAAAGGAACCCAATTTGGGTTTTCCAACAACCAGCAATATCCCAGTAAGAGGTCCACACAAGAAGTCAACAATGAGGAGGACTGAATTGTATATTGGACTAGCTGTGGTTGCACTTGGAGGGATTATCTTGGCTTTTGCAGCAGCCTTTTTCTTCATCAGATTAAAGCAAAAGAAGGAGGGAGAGAATAATTCAGGCAAAGAAGGAGATATGGAGCTGCAACATCTGAACCAAAGTGTGAGAACCACCAGTGACAAGAAAGTTTCCTTTGAGGGATCTCAGGATGCCCTTGATGGGAAAATCATTGATGATGCAGCAGCAACACCCCGCAAGACGCTGCTGCTTGAGACATACACCACTGAAGATGTGAGAAAAGCAACTGAGGATTTCAGTTCAAGTTGTCACATTGAAGGGTCAGTATTTCATGGTCTTCTAAATGGGAAGAACATGGCAATCAAAAGAGTGAAGACAGAGATGGTGTCAAAGATAGATCTTGGCCTTTTCCATGATCCACTCCACCAACACCATCCCAACATACTTAGGCTTCTAGGGACAAGCTTATCAGAAGGGTCAGAAGAGTCATTTTTGGTTTTTGAGTATGCCAAAAATGGTTCACTGAAAGATTGGCTTCATGGAGGCTTGGCCATCAAGAACCAGTACATTGCTTCCTGCTATTGTTTCCTGAATTGGAGCCAAAGGCTAAGGATCTGCCTTGATGTGGCCACTGCCTTGCAGCACATGCACCACTTCATAAATCCAAGCTATGTGCATAGGAATGTGAAGAGCAGGAACATCTTTCTAGATGAGGAGTTTGGTGCCAAGATAGGAAACTTTGGGATGGCAGGGTGTGTTGAGAATGAGACTGAGGACCCAAATTTCTATTCTACTAACCCAGCCACTTGGAGTCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTGAAATCTCCCCAAGCATTGACATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTCTTGTCTGGTCAAACACCTATAAGTGGGTCAAGTGGTGATAAAGGGGAAGAAGGAAGCATTTGGCTTAGTGACAAAATCAAGTCCATTTTGGTGTCAGAAAATGTGAATGCTGAACTAAGGGAGTGGATAGACAGTGCATTAGGGGAGAACTACTCATTGGATGCAGCTTTGGCTGTGGCCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCTTCTTTGAGGCCTAGTGCAAGGGAAATTGTTGAGAAGATGTCAAGATTGGTGGAGGAACTACCAGAAGGGGAACAGAAGCACATGTTAATGAGTGAAAGCTCTAGCAAGCCTCTGGTGGATGCAGTAGTAGCAAGCAATCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00691	79498	81594	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000691s00031271.1	PF01476.15	LysM	186	218	3.60E-07
Glyur000691s00031271.1	PF00069.20	Pkinase	386	663	1.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.295
SRR1783600	control	0.298
SRR1783602	moderate drought stress	1.338
SRR1811619	moderate drought stress	1.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.595
DRR006520	Root Summer glycyrrhizin high producing strain	4.437
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.885
DRR006524	Root Summer glycyrrhizin low producing strain	0.949
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.805
SRR2868004	Drought Stress (root)	1.080
SRR2967015	Control (root)	0.779

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.966
SRR9715743	Root	0.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.186
SRR8400027	Control - Root	0.383