Gene detail information of Glyur000691s00031268 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76650.3 | 3.00E-06 | calmodulin-like 38 |
| NR | XP_008799158.1 | 8.10E-14 | PREDICTED: putative calcium-binding protein CML19 [Phoenix dactylifera] |
| Swissprot | tr|Q9SRE6|CML38_ARATH | 9.00E-08 | Calcium-binding protein CML38 |
| trEMBL | tr|G7KNL8|G7KNL8_MEDTR | 1.00E-12 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AES75041.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00691 | 43089 | 43376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000691s00031268.1 | PF13833.1 | EF-hand_8 | 15 | 51 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.322 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.669 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.177 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.795 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.070 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.024 |
| SRR2868004 | Drought Stress (root) | 4.165 |
| SRR2967015 | Control (root) | 5.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 85.104 |
| SRR9715740 | Leaf | 26.348 |
| SRR9715741 | Leaf | 90.602 |
| SRR9715739 | Root | 4.561 |
| SRR9715742 | Root | 18.101 |
| SRR9715743 | Root | 14.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 184.015 |
| SRR8749028 | MeJA induced 9h | 226.332 |
| SRR8749029 | MeJA induced 9h | 378.502 |
| SRR8749030 | Uninduced | 140.010 |
| SRR8749031 | Uninduced | 322.082 |
| SRR8749032 | Uninduced | 243.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.632 |
| SRR8400027 | Control - Root | 8.277 |