Gene detail

Gene detail information of Glyur000690s00025183

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16390.1	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004507605.1	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q8GWE0\|PP314_ARATH	Pentatricopeptide repeat-containing protein At4g16390, chloroplastic (Precursor)
trEMBL	tr\|G7JMV3\|G7JMV3_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:AES92776.1}

Sequence

Transcript Sequence

>Glyur000690s00025183.1
ATGGCTTACCATCTGTGCTCTTCCCCTTCCTCTCTCTTCCACGACCTCTTTATCTCTTCTTCTTCCCGNAAGTTCAAAGTTCGAAACTTTGCCTCTTCCTTTCAACCCCCTTCCCCGCTCACGCCCCACTCCAAAACNTTTCTCCACGCCAACCACGTCTCCTTGCAGGAACCTATTCCACAGCAACTAGCACAGGGCGTTATCTCCGAGGAACACGCAAACTCTGAGGACCCACTTGGAAAATCTTCGTCCTCGTCTTCGTCGAAAAGCAGTTACATTTGGGTCAATCCCAAAAGTCGAAGAGCCAAACAACTTGGGAAGAAATCCTATGATGCCAGGTACACTTCTCTTGTCAACATTGCCCACTCTTTGGATTCCTGCAATCCCACCGAACATGATGTCTCTGAAGTGTTGAAGGGTTTAGGGGATAAGGTTTTAGAGCAAGACGCCGTAATTGTCATCAACAACATGGTGAATTCCGTTACTGCACCTCTTGTTCTTGAATACTTTCAGCGAAAGATTACACCCACCAGGGAGGTGATTCTTTACAATGTCACCCTCAAGGTGTTTAGAAAGTGTAAGGATTTGGATGGAGCGGAGAAGCTGTTTGATGAAATGCTTGAGAGAGGTGTGAAGNCTGATAATGTTACNTTTTCAACTATAATTAGCTGTGCTAGGTCGTGTTATTTGCCCAATAAGGCCGTGGAGTGGTTTGAAAAGATGCCCTCCTATGGTTGTGAACCTGATGATGTTACATACTCGGTTATGATTGATGCTTATGGAAAGGCTGGTAATATTGATATGGCTTTGAACCTGTATGATCGTGCCAGGACTGAGAAATGGCGCATTGATACCGTGACCTTCTCAACGTTGATTAAGATGTATGGGTTGGCAGGAAATTATGATGGATGCTTGAATGTCTATGAAGAAATGAAGGCTGTTGGTGTTAAGCCTAATTTGGTTGTTTATAACACACTGTTGGATGCCATGGGGAGAGCAAAGAGGCCTTGGCAGGCCAAGACTATATATAAAGAGATGGCTAATAATGGATTTTCACCAAATCGGGCAACCTATGCATCTCTCTTACAGGCCTATGGTAGAGCACGGTACAGTGAAGATGCTCTCATTGTTTACAAGGAAATGAAGGAAAAGGGAATGGANTTGAATACACATCTTTATAATACCCTTTTAGCCATGTGTGCCGATGTGGGCTATGCTGACGAAGCATTTGAAATTTTTGAAGACATGAGAAGTTCTNCTNCNTGCCTTCCTGACAGTTGGACATTCTCNTCCCTAATTACCATATATTCCTGCAGTGGGAAAGTCTCAGACGCTNAAAGAATGTTCAATGAAATGATTGAGTCTGGATTCGAGCCTACCATTTTTGTTCTCACATCACTTGTCCAGTGCTATGGAAAAGCCAAGCGTACCGATGACGTTGTGAAGACGTTTAATCAGCTCTTGGATTTGGGCATGGCTCCAGATGATAGATTCTGTGGTTGTCTTCTGAATGTAATGACCCAAACACCAAAAGAAGAACTTGGTAAGCTAACAGATTGTGTGGAGAAGGCTAATCCAAAGCTTGGGTCTGTGGTAAGATATGTGGTGGAAGGGCTGGAGGGTGATGGAGAGTTTAGAAAAGAAGCATCAGAACTCTTTAATTCAATTATTGACGGAGTAAAGAAGGCCTTTTGCAATTCTCTGATTGATCTTTGTATCAACCTGGATATGTTGGACAGAGCATGTGAGCTTCTTGACCTGGGGTTGACACTTGAGATATATACAGATATACAATCCAGGACTCAAACTCAGTGGTCTTTGCACCTAAAGGGTCTCTCACCCGGAGCTGCACTGACTGCATTCCATGTCTGGATAAATGACTTGTCTAAGGCTTTGGAATCAGGAGAGGACCTTCCACCACTGCTTGGAATTAATACCGGTCATGGGAAACACAAGTATTCAGAGAAAGGTTTGGCAAGTGTGTTTGAATCACATTTGAAGGAACTCGGTGCTCCATTGCAGGAGGCTCCTGATAAGGCTGGCTGGTTTTTGACTACACAGGTAGCAGCCAAGTCATGGCTGGAGTCTAGGGGTTCATCTGAATTAGTTGCTGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00690	107723	109840	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000690s00025183.1	PF13041.1	PPR_2	180	224	3.70E-10
Glyur000690s00025183.1	PF12854.2	PPR_1	245	275	9.70E-09
Glyur000690s00025183.1	PF01535.15	PPR	286	316	1.60E-05
Glyur000690s00025183.1	PF13041.1	PPR_2	318	365	1.40E-10
Glyur000690s00025183.1	PF13041.1	PPR_2	389	434	3.70E-11
Glyur000690s00025183.1	PF01535.15	PPR	464	491	0.071

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.797
SRR1783600	control	5.017
SRR1783602	moderate drought stress	3.357
SRR1811619	moderate drought stress	3.346

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.012
DRR006520	Root Summer glycyrrhizin high producing strain	5.044
DRR006521	Root Winter glycyrrhizin high producing strain	2.027
DRR006522	Root Winter glycyrrhizin high producing strain	2.019
DRR006523	Root Summer glycyrrhizin low producing strain	3.670
DRR006524	Root Summer glycyrrhizin low producing strain	3.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.017
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.277
SRR2868004	Drought Stress (root)	3.463
SRR2967015	Control (root)	3.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.108
SRR9715740	Leaf	14.324
SRR9715741	Leaf	2.881
SRR9715739	Root	4.193
SRR9715742	Root	3.021
SRR9715743	Root	2.741

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.546
SRR8749028	MeJA induced 9h	1.751
SRR8749029	MeJA induced 9h	0.594
SRR8749030	Uninduced	0.960
SRR8749031	Uninduced	2.535
SRR8749032	Uninduced	2.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.515
SRR8400027	Control - Root	5.277