Gene detail

Gene detail information of Glyur000690s00025173

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16390.1	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004507605.1	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q8GWE0\|PP314_ARATH	Pentatricopeptide repeat-containing protein At4g16390, chloroplastic (Precursor)
trEMBL	tr\|G7JMV3\|G7JMV3_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:AES92776.1}

Sequence

Transcript Sequence

>Glyur000690s00025173.1
ATGGCATACCGTCTTTGCTCTACTCCTTCCGCTCTCCTCCACGACCTACCCTCCATCTCTTCTTCTTCCCGCAAATTCAAAGTTCGAAACTTTATCCCTTCCTTTCAAACCCCACCTTCGCTCACGTCCCAATCCAAAACCTTTCTCCATGCCAACCACGTCTCCTTGCAGGAACCTATTCCACAGCAACTAGCACAGGACATTAACTCCGAGGAACACGCAAACTCTGAGGACCCACTTGGAAAATCTTCGTCGAAAAGCAGTTACATTTGGGTCAATCCCAAAAGTCCCAGAGCCAAACAGCTTGGGAAGATATCCTATGATGCCAAGTACACTTCTCTTGTCAACCTTGCCCGCTCTTTGGATTCCTGCAATCCCACCGAACATGATGTCTCTGAAGTGTTGAAGGGCTTAGGGGATAAGGTTTTAGAGCAAGACGCCGTAATTGTCATCAACAACATGGTGAATTCCGTCACTGCACCTCTTGTTCTTGAATACTTTCAGCGAAAGATTACACCCACCAGGGAGGTGATTCTTTACAATGTCACCCTTAAGGTGTTTCGAAAGTGTAAGGATTTGGATGGAGCAGAGAAGCTGTTTGATCAAATGCTTGAGAGAGGAGTGAGGCCTGATAATATTACCTTTTCAACTATAATTAGCTGCGCTAGGATGTGTTATTTGCCCAATAAAGCCGTGGAATGGTATGAAAAGATGCCCTCCTTTGGCTGTGAACCTGATGATCTTACATACTCGGTCATGATTGATGCTTATGGCCGTGCTGGTAATATTGATATGGCTTTGAACCTGTATGATCGTGCCAGAACCGAGAAATGGCGCATTGATACCGTGACATTCTCAACGCTGATTAAGATGTATGGGTTGGCAGGAAATTATGATGGATGCTTAAATGTCTATGAAGAAATGAAGGCTCTTGGTGTTAAGCCTAACTTGGTTGTTTATAACACACTGTTGGATGCCATGGGGAGAGCAAAGAGGCCCTGGCAGGCCAAGACTATATATAAAGAGATGACTAATAATGGATTTTCACCAAATCGGGCAACCTATGCATCTCTCTTACAGGCCTATGGTAGAGCACGGTACAGTGAAGATGCTCTCATTGTTTACAAGGAAATGAAGGAAAAGGGAATGGATTTGAATACACATCTTTATAATACCCTTTTAGCCATGTGTGCCGATGTGGGCTATGCTGACGAAGCATTTGAAATTTTTGAAGACATGAGAAACGCTGAAAGAATGTTCAATGAAATGATTGAGTCTGGATTCGAGCCTACCATTTTTGTTCTCACATCACTTGTCCAGTGCTATGGAAAAGCCAAGCGTACCGACGATGTTGTGAAGACTTTCAACCAGCTCTTGGATTTGGGCATGGCTCCAGATGATCGACTCTGTGGTTGTCTTCTGAATGTTATGACCCAAACACCAAAAGAAGAACTTGGTAAGCTAACAGAATGTGTGGAGAAGGCTAATCCAAAGCTTGGGTCTGTGGTAAGATATTTGGTGGAAGGGCAGGATGGCGATGGAGAGTTTAGAAAAGAGGCATCAGAACTATTTAATTCAATTATTGATGGAGTAAAGAAGGCCTTTTGCAATTCTCTGATTGATCTTTGCATCAACCTGGATTTGTTGGACAGAGCCTGTGAGCTTCTGGACCTGGGGTTGACACTTGAGATATACATGGATATACAATCCAGGTCTCAAACTCAGTGGTCTTTGCACCTAAAGGGTCTCTCAGCNGGATCTGCGCTGACTGCATTCCATGTTTGGATGCATGACTTGTCTAAGGCTTTGGAATCAGGAGGGGACCTTCCACCACTGCTTGGAATTAATACNGGTCATGGGAAACACAAGTATTCTGAGAAAGGTTTGGCAAGTGTGTTTGAATCACATTTGAAGGAACTCAATGCTCCATTCCATGAGGCTCCTGATAAGGCTGGCTGGTTTTTGACTACACAGGTAGCAGTCAAGTCATGGCTGGAGTCTAGNGGTTCATCTGAACTAGCTCCTGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00690	70652	72760	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000690s00025173.1	PF13041.1	PPR_2	177	221	6.00E-11
Glyur000690s00025173.1	PF13041.1	PPR_2	249	292	5.00E-08
Glyur000690s00025173.1	PF13041.1	PPR_2	315	362	8.80E-11
Glyur000690s00025173.1	PF01535.15	PPR	390	415	0.0003
Glyur000690s00025173.1	PF01535.15	PPR	435	462	0.067

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.371
SRR1783600	control	2.224
SRR1783602	moderate drought stress	2.644
SRR1811619	moderate drought stress	2.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.814
DRR006520	Root Summer glycyrrhizin high producing strain	3.620
DRR006521	Root Winter glycyrrhizin high producing strain	2.469
DRR006522	Root Winter glycyrrhizin high producing strain	2.452
DRR006523	Root Summer glycyrrhizin low producing strain	3.852
DRR006524	Root Summer glycyrrhizin low producing strain	3.825
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.849
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.193

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.119
SRR2868004	Drought Stress (root)	3.141
SRR2967015	Control (root)	3.052

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.222
SRR9715740	Leaf	12.627
SRR9715741	Leaf	4.453
SRR9715739	Root	2.802
SRR9715742	Root	3.111
SRR9715743	Root	2.878

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.406
SRR8749028	MeJA induced 9h	2.049
SRR8749029	MeJA induced 9h	1.546
SRR8749030	Uninduced	0.738
SRR8749031	Uninduced	1.189
SRR8749032	Uninduced	1.554

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.238
SRR8400027	Control - Root	4.642