Gene detail

Gene detail information of Glyur000690s00025170

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G17230.1	SCARECROW-like 13
NR	XP_004507608.1	PREDICTED: scarecrow-like protein 13-like [Cicer arietinum]
Swissprot	tr\|Q9M0M5\|SCL13_ARATH	Scarecrow-like protein 13
trEMBL	tr\|I1MQZ7\|I1MQZ7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01150.1}

Sequence

Transcript Sequence

>Glyur000690s00025170.1
ATGTTGCAAAACAACCAGGGAACTGCTATTTCTTTTGAAACCTGCAAGGAGCAATACTTCACACTGGAATCATGCACGAGAATCACTGGTTTCTTGGATTGTGATTCCCCTTCCTATGCCAGCGTATTATCTAATAGAAGTCCATTTTCTCCACAAGATTCCCGGTCATGCTATTCAGATCACCACCAGTCATCTGACAACACCTATGGATCACCGATAAGCGGGTTGTCTAGTGTTGATGATGGGGATGAATTGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGGTCTGATGAATCAGATATTGTCGACGGTTGTGGCTGCTGCATGGTGGGTAGCCTCCACGGAGCATCTCCATCAGCTAAATATAATTGGGATCTGATTGCAGAAAATATTCCGAAGCTTAACTTGAAAGAAGTCTTCTTGGTATGTGCACAGGCTGTGTCAGATGATGATATTCCAACAGCAAGAGGCTGGATGGATCNTGTATTGGGGAAGATGGTATCAGTTACTGGAGATCCATTCCAAAGGTTGGGTGCTTACCTGTTGGAGGGGCTTAGAGCAAGGTTGGAATTATCAGGTAGTATGATCTACAAAGCCTTGAAGTGTGAACAACCAACAGGCAAAGAGCTAATGAGTTACATGCACATCATGTATCAGATTTGTCCATATTGGAAGTTTGCNTACATATCTGCAAATGCTGTCATTGCAGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAAATTGCACAGGGCACACAATGGCATTTACTTATCCAGGCTCTTGCCCATAGGCCTGGCGGGNCCCCTTTCGTTCAAATAACTGGTGTTGATGATTCCCAATCATTTCATGCCCGGGGTGGAGGACTTCAGATTGTAGGAGAAAAGCTTTCAGATTTTGCCAGGTCTTGCGGAGTTCCATTTGAGTTCCATAGTGCTGCAATGTATGGTTGCGAGGTTCAACAGGAAAATCTTGGAGTTCGACCTGGCGAAGCTGTGGCTGTAAACTTTCCATATGTTTTGCACCACATGCCAGATGAGAGTGTCGGCATAGAGAATCATAGAGACAGACTGTTGAGATTGGTTAAGAGCTTGTCCCCAAAGGTTGTCACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCTTTCTTTCAGAGGTTTGTGGAGACCCTGGATTATTATACAGCCATGTTTGAATCAATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATTAGTGCAGAGCAGCACTGTGTGGCACGTGACATTGTCAACATGATAGCCTGCGAGGGGGTTGAGAGGGTGGAAAGGCATGAACTTTTTGGAAAGTGGAGGTTAAGATTTTCCATGGCTGGATTTAGACAATGCCCTTTGAGTTCNTCAGTGATGGCTGCTGCCCAAAATCTCTTGAAGGACTTCAATCAAAACTATAGGCTTGANCAGAGAGATGGTGCTCTCTATCTTGGTTGGATGAGGAGGGCTTTGGTCACCTCTTCTGCTTGGAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00690	56215	57747	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000690s00025170.1	PF03514.9	GRAS	140	510	1.90E-124

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.116
SRR1783600	control	9.430
SRR1783602	moderate drought stress	8.589
SRR1811619	moderate drought stress	8.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	97.581
DRR006520	Root Summer glycyrrhizin high producing strain	95.555
DRR006521	Root Winter glycyrrhizin high producing strain	54.517
DRR006522	Root Winter glycyrrhizin high producing strain	52.407
DRR006523	Root Summer glycyrrhizin low producing strain	120.360
DRR006524	Root Summer glycyrrhizin low producing strain	115.918
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.704

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.198
SRR2868004	Drought Stress (root)	29.076
SRR2967015	Control (root)	179.793

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	98.326
SRR9715740	Leaf	116.262
SRR9715741	Leaf	100.434
SRR9715739	Root	237.835
SRR9715742	Root	417.493
SRR9715743	Root	394.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	129.927
SRR8749028	MeJA induced 9h	132.730
SRR8749029	MeJA induced 9h	117.503
SRR8749030	Uninduced	50.991
SRR8749031	Uninduced	25.544
SRR8749032	Uninduced	59.587

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.684
SRR8400027	Control - Root	103.904