Gene detail

Gene detail information of Glyur000690s00025165

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47530.1	5.00E-78	Auxin-responsive family protein
NR	XP_004507609.1	0	PREDICTED: uncharacterized protein LOC101501943 [Cicer arietinum]
Swissprot	tr\|Q9FGK4\|B561J_ARATH	1.00E-103	Cytochrome b561 and DOMON domain-containing protein At5g47530 (Precursor)
trEMBL	tr\|I1MR00\|I1MR00_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01170.1}

Sequence

Transcript Sequence

>Glyur000690s00025165.1
ATGGCTGCAAACATGTTGAGGGTCGTGTTGGCCTTGTCTGTTCTGTGTTGTGTGTTTCTGACATCCTCTGCTCAAACATGTAAAACACAAACATTCTCAAACAACAAGGTGTTTGCCACCTGTCGTGATCTTCCACAGTTGACCTCGTACCTCCACTGGACTTATGACCAGAACAGTGGCAAACTAGACATAGCATTCAGGCACGGTGGAATAACAACATCCACAAATAGGTGGGTTGCTTGGGCCATCAACCCAAACAACGATCTCGACCCAGCCATGGTTGGAGCACAGGCTCTGGTTGCTATCCCACAATCCAATGGAAGCCCAACAGCGTACACTTCCTCCATCGCTAACACCGACACGCAGTTGCAATCGGGAAGTATCCGTTACCCTGTCTCTGCTTTGTCTGCCACNTATCAGAACAACGAGGTAACCATTTTCGCTACCTTGACCCTTCCGAACGGCACAACCTCCTTGGTCCACCTCTGGCAAGATGGCTTCCTTGACTCTGCCTCTATCCCTCAAGAGCATAGCCATGAATCTTCCCACCAAAACTCCAAGGAACTCTTGGATCTTGTTTCTGGTACCTCCCAGGCTGCAAGTGGGAGTTCACACGCATGGAGTGCTAAATGCAATAAGCTGGGGCATCTTGCTGCCCCTGGGTGCCATAATTGCGAGGTGTTCAAATCAGCTGACCCTGCTTGGTTTTATCTTCATGTGACGTGTCAAGCCTCTGCCTACATAGTTGGCGTTGCTGGATTTGGTGTTGGCCTCAAAATCGGCAGTGACTCCAAGGGTGTTGAATATGACACTCATAGAATACTTGCTATTCTCCTTGTATGCTTTGGAACTCTTCAGGTGTTTGCTCTGTTCTTGAGGCCCAACAAAGACCATAAATTGAGATTCTACTGGAATATGTACCACTACGTAGTGGGATACGCCACCATAGTCATCAGTNTCGTCAACGTTTTTCAAGGGTTCAAAGCATTGGATGATTACGTAGGGGATCGCTACAATGACTGGAAGCATGCCTACATTGGAATCATTGGGGCTTTGGGGGGCATTGCTGTCCTTTTGGAAGCCTACACGTGGATCGTAGTCTTGAAGAGGAGGCAGTCAGAGAGCAAAACGGCACATGGCATCAATGGNGCAAATGGTGTTAATGGCCATGGTTCTGGCCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00690	20664	22284	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000690s00025165.1	PF04526.8	DUF568	93	192	2.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.115
SRR1783600	control	14.222
SRR1783602	moderate drought stress	10.850
SRR1811619	moderate drought stress	10.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.815
DRR006520	Root Summer glycyrrhizin high producing strain	2.784
DRR006521	Root Winter glycyrrhizin high producing strain	0.927
DRR006522	Root Winter glycyrrhizin high producing strain	0.906
DRR006523	Root Summer glycyrrhizin low producing strain	7.576
DRR006524	Root Summer glycyrrhizin low producing strain	8.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.056
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	116.154
SRR2868004	Drought Stress (root)	130.016
SRR2967015	Control (root)	118.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.753
SRR9715740	Leaf	5.178
SRR9715741	Leaf	8.104
SRR9715739	Root	23.492
SRR9715742	Root	17.293
SRR9715743	Root	17.787

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.430
SRR8749028	MeJA induced 9h	14.342
SRR8749029	MeJA induced 9h	5.874
SRR8749030	Uninduced	93.556
SRR8749031	Uninduced	62.728
SRR8749032	Uninduced	27.860

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.789
SRR8400027	Control - Root	27.620