Gene detail information of Glyur000688s00027123 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31920.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_006572946.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Glycine max] |
| Swissprot | tr|Q9C6T2|PPR68_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g31920 |
| trEMBL | tr|I1J4M9|I1J4M9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G01480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00688 | 44705 | 49739 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000688s00027123.1 | PF13041.1 | PPR_2 | 100 | 142 | 1.70E-07 |
| Glyur000688s00027123.1 | PF01535.15 | PPR | 172 | 198 | 0.0015 |
| Glyur000688s00027123.1 | PF01535.15 | PPR | 201 | 230 | 0.0063 |
| Glyur000688s00027123.1 | PF13041.1 | PPR_2 | 299 | 347 | 2.40E-08 |
| Glyur000688s00027123.1 | PF01535.15 | PPR | 375 | 398 | 0.032 |
| Glyur000688s00027123.1 | PF14432.1 | DYW_deaminase | 485 | 601 | 1.20E-13 |
| Glyur000688s00027123.1 | PF05871.7 | ESCRT-II | 610 | 737 | 1.50E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.625 |
| SRR1783600 | control | 1.725 |
| SRR1783602 | moderate drought stress | 1.874 |
| SRR1811619 | moderate drought stress | 1.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.146 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.676 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.277 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.431 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.321 |
| SRR2868004 | Drought Stress (root) | 12.905 |
| SRR2967015 | Control (root) | 10.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.281 |
| SRR9715740 | Leaf | 23.711 |
| SRR9715741 | Leaf | 19.946 |
| SRR9715739 | Root | 1.339 |
| SRR9715742 | Root | 3.920 |
| SRR9715743 | Root | 3.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.921 |
| SRR8749028 | MeJA induced 9h | 9.854 |
| SRR8749029 | MeJA induced 9h | 11.468 |
| SRR8749030 | Uninduced | 10.868 |
| SRR8749031 | Uninduced | 10.140 |
| SRR8749032 | Uninduced | 8.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.608 |
| SRR8400027 | Control - Root | 9.800 |