Gene detail information of Glyur000688s00027122 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68310.2 | 2.00E-64 | Protein of unknown function (DUF59) |
| NR | XP_007158235.1 | 7.89E-98 | hypothetical protein PHAVU_002G135400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C9G6|U195A_ARATH | 5.00E-81 | MIP18 family protein At1g68310 |
| trEMBL | tr|V7CJE0|V7CJE0_PHAVU | 3.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:ESW30229.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00688 | 40860 | 43437 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000688s00027122.1 | PF01883.14 | DUF59 | 61 | 130 | 9.60E-07 |
| Glyur000688s00027122.2 | PF01883.14 | DUF59 | 41 | 105 | 2.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.430 |
| SRR1783600 | control | 12.441 |
| SRR1783602 | moderate drought stress | 12.393 |
| SRR1811619 | moderate drought stress | 10.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.189 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 76.364 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 71.474 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.455 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.570 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.555 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.153 |
| SRR2868004 | Drought Stress (root) | 59.326 |
| SRR2967015 | Control (root) | 55.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.630 |
| SRR9715740 | Leaf | 40.742 |
| SRR9715741 | Leaf | 49.203 |
| SRR9715739 | Root | 11.818 |
| SRR9715742 | Root | 22.148 |
| SRR9715743 | Root | 18.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.504 |
| SRR8749028 | MeJA induced 9h | 29.522 |
| SRR8749029 | MeJA induced 9h | 24.811 |
| SRR8749030 | Uninduced | 32.809 |
| SRR8749031 | Uninduced | 45.758 |
| SRR8749032 | Uninduced | 35.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.650 |
| SRR8400027 | Control - Root | 46.618 |