Gene detail

Gene detail information of Glyur000688s00027120.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32130.1	2.00E-148	Transcription elongation factor (TFIIS) family protein
NR	XP_007158233.1	0	hypothetical protein PHAVU_002G135200g [Phaseolus vulgaris]
trEMBL	tr\|V7CJ79\|V7CJ79_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30227.1}

Sequence

Transcript Sequence

>Glyur000688s00027120.1
AAAAGTCAAAAACCACATCCCCAACAGGCAATATGCTCCAGTAGCACCGTGTATGATTCGGACCGACCCGGTTTGCAGCTCATCGATCTCCTTCAGTTTCGAAAAACCCTCTCTTCCTCCCATCTCATCCCTATCGCAATTCCCCTCTCACATCTCATACATATCTATCTCCTTTTCCTTTCATTTTTTTCACTGTTACACCCAAACCCTACCCCACTTTCCAGCTATTTCATAGTTTCTCAACACACAACAACACAATTCTCGATCCACCATGGGTTACGAAGACGATCCGTATCGCGACGAGGACGGTGAACCTTTGATGGACTACGACGACATTCAATCCGATCGCGAACCTTCTCCGGAGCCGCAGCAACAGCTCGACGATTTCGAGGAAGAAGACGTCGANAATTGGCGNGGCCGGGACNGGTCTCAGACACCGGTGTACGACANCGATCCGTCGAGGTCGAAGCCCAGGAAGAGGCTGATTAAGAAGAGCGACGCCGGCAATCGGTCGATGGCGCCGGAGCTCGACGATGAGGAGGAGGAGGACCGTGTTCCTGCGAGGGACGAGGAGGGGGATATGAGGAAGAGGAAGAAGGGGAAGGATGTTGGCTCCGGGNATAAGGAAAAGAGGCTTAAGGGGGATAAGAGGTTTGGAAGTAGCGGTGGAAAGGGAGGGTCCAAATTTGGGGCTTCAAAAAGAGGGTTTGGTGGTAAGGCTGGGAAGGATCACGATGGTGAGGTTAAGGAGATGTGGGATACAATTGCTGGTGGGGATTCTGAGGATGATCACGATGGTGTCAGGAATGTGGATGATGACAACTTTATAGATGATACTGGAGTGGAACCTGCTTATTATGGTAGTGACAATGAACCGCNTTCTCCTGGTGATGCTCCCCAGGCAGAGGAAGGCGAAGAGGATGACGAAATCAAGGATCTTTTCAAGATAGGTAAGAAAAAGAAGAAGAACGAACGAAGTCCTGCAGAAATAGCTTTATTAGTCGAGAATGTCATGGCTGAGCTTGAGGTCACGGCTGAAGAGGATGCCGACCTTAATAGACAGGGGAAGCCTGCTATTAATAAACTCAAGAAGCTGCCTCTTCTTACAGAAGTCCTTTCAAAGAAACAGCTTCAACTAGAGTTTTTAGATCACGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCCTGATGGAAGCCTGCCAAATATAAACATACGCACAGCAATTTTGAAGATTTTGAATGATTTTCCTATAGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGAAAGGTGATTATGTTTTTATCAAAGTCCGATGAAGAAATCAACGTAAATAGGAAATTAGCCAAGGATCTGGTCGATAAATGGAGCCGACCTATATTTAATAAGAGCACGCGGTTTGAAGACATGCGAAGTATTGAGGATGATAGGGTTCCTTTCAGGAGGCCATCAGTTAAAAAGCCGACAAATAAAGCTGCAGGGATGGAATCCAGAGATAGTGATCTTGATTTGGAGCTTTCACAGCCTAGGTCTGGACAGTCCTCTTCCAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGCCCCCAATCTAAAATTGATCCAGAAGAAATCAGAGCACGAGCNAAACAAGCTGCACAAGATCAGCAGCGTATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAGGCAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGCATGGTCAAATACTTGTAAATGTGACTAATACAATACTGGATGAATATGTTCGTCCGGCAAGCTTGACATTATGTGCTGCCCTAATGTTAATTCTTTTAAANGAATATCCAGTGAGCTTTCTTTGGNATCTATGTTCCAGTCATTGAAATTTGATGGGGATGTCATCAAAATACACTCCTTTAATTTACTGCATTGATTGTGTATTCGTGAACTGAAGTACATTGGATGATTATGTACGTGTCATTTACTTTGTCTTCTTTCGAATAACGAAGCTTTGGTTTGTCATCAGTTTATGAAGTGTAAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00688	26148	31486	-

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000688s00027120.1	PF08711.6	Med26	321	379	7.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.506
SRR1783600	control	77.753
SRR1783602	moderate drought stress	92.605
SRR1811619	moderate drought stress	91.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	114.839
DRR006520	Root Summer glycyrrhizin high producing strain	112.729
DRR006521	Root Winter glycyrrhizin high producing strain	246.621
DRR006522	Root Winter glycyrrhizin high producing strain	238.499
DRR006523	Root Summer glycyrrhizin low producing strain	95.238
DRR006524	Root Summer glycyrrhizin low producing strain	94.957
DRR006525	Leaf Summer glycyrrhizin high producing strain	76.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	75.583

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	141.995
SRR2868004	Drought Stress (root)	160.260
SRR2967015	Control (root)	175.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	77.355
SRR9715740	Leaf	84.682
SRR9715741	Leaf	91.197
SRR9715739	Root	31.451
SRR9715742	Root	80.128
SRR9715743	Root	75.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	91.714
SRR8749028	MeJA induced 9h	162.514
SRR8749029	MeJA induced 9h	132.074
SRR8749030	Uninduced	181.276
SRR8749031	Uninduced	268.997
SRR8749032	Uninduced	240.439

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	146.641
SRR8400027	Control - Root	152.546