Gene detail information of Glyur000688s00027119 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18670.1 | 8.00E-76 | Ankyrin repeat family protein |
| NR | KHN40430.1 | 0 | Ankyrin repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9C7A2|Y3236_ARATH | 2.00E-06 | Ankyrin repeat-containing protein At3g12360 |
| trEMBL | tr|G7K9M3|G7K9M3_MEDTR | 0 | Ankyrin repeat protein {ECO:0000313|EMBL:AES95682.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00688 | 17433 | 22277 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000688s00027119.1 | PF12796.2 | Ank_2 | 21 | 115 | 3.80E-08 |
| Glyur000688s00027119.1 | PF13962.1 | PGG | 426 | 538 | 6.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.004 |
| SRR1783600 | control | 5.451 |
| SRR1783602 | moderate drought stress | 2.292 |
| SRR1811619 | moderate drought stress | 2.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.834 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.954 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.287 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.041 |
| SRR2868004 | Drought Stress (root) | 1.599 |
| SRR2967015 | Control (root) | 1.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.125 |
| SRR9715740 | Leaf | 0.048 |
| SRR9715741 | Leaf | 0.053 |
| SRR9715739 | Root | 0.895 |
| SRR9715742 | Root | 0.506 |
| SRR9715743 | Root | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.103 |
| SRR8400027 | Control - Root | 7.067 |