Gene detail

Gene detail information of Glyur000688s00027118

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-37	NB-ARC domain-containing disease resistance protein
NR	XP_003612736.1	0	Cc-nbs-lrr resistance protein [Medicago truncatula]
COG	NP_522403.1	2.00E-09	hypothetical protein RS05354 [Ralstonia solanacearum GMI1000]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	8.00E-76	Putative disease resistance protein RGA4
trEMBL	tr\|G7KAW6\|G7KAW6_MEDTR	0	NBS-LRR resistance protein {ECO:0000313\|EMBL:AES95694.1}

Sequence

Transcript Sequence

>Glyur000688s00027118.1
ATGGACGCATCAATTCTTGCCGATACCATCTCGGACATCCTTCGATGGACGAGTTCCCTAAAACCCCTCCCAATTTATCTGTCAGCAAAGGACATCAGCCACTTGAAAAACCATCTGGAAGACATCCGTGCCAAGGTGAAAAAAGCGAAGCAAATCAACCACTACTCATCCTCCCAGACCTCCGAGGAGGTTCAGCTTTGGCTTCAAAATGTCAAGGGAGTGATCATCGATTTGAAAGATTTGATGGAGGAGGATCTCCATAACCAGGAGAGTAGTAGCACTGGAAGCAGACTCAAAGTCAAGTACCTAGTCAAGAATGCCGCGAAGGAGATCAAACGCTTGAGCGAGAAGGCACAGACCATGTCCTTCCCTGAAGAAGAAGAAAAAGAAGCAGGGGAGATGAATTCTCGAAAGCGGTACGATGAATTTGCGAAAGGCGTTGTGGCGGTTGGTAGAGAAAATGAAAAGAAGAAGGTCATAGACCAATTGCTGAACGGTGACGTTGCTGTTCCTGTAGTTGCCATTGTCGGGGTTCCCGGAATAGGGAAGACAAAACTTGCCCGTCTCGTTTACGAGGATAAGCAAGTCAACGCTCATTTTAGCTTCCAAACCTGGGTTGATCATCTCCGCCACGAAACCTTTGATGTGGAATCCGTCGCAGAAAGCGTGACTAAGTCAGCTACGTCGTCCACCGAAGGTCAACGCCGTTACCTACTTGTGCTCGACGATTTAAGGATTGAAATCGACGGCGAATGTCTCGAGAAGCTGAAGCAGAAACTAACGGAGGCTGGTCTTACCAGTGGCGCAATACTCATAACGACACGTAGCAACCTCGTCGCCAACAACATTGCTGGTGTTGCTGCGAGACATGTTTTGCAGGGGCTCAACGAAAAGGATTCTCGGGCGCTGTTCCAACGAGTTCATCGAGAACCCGTACTCTCAAACGACGTCGTGTGGGAGATCGTGAGGGAATGCGGTGGAGTCCCTCTGGCGATAATAATCCTAGCAAGGTTGCGGAACAACCGTCGTGGTACACGTGGCAATAATTCCTCTGTTCCGGTGGAGGAGGAGTTTCTACAAGAGCTCAAGTTTACCTATTACGAAGATCTCCCAACGTATCAGAAGCTCTGTTTTTCTTATTGTTCATTGTTCCCTCCAGATTATTTATTTGACGCCGAGAGATTGATTCAGCTCTGGATGGCTGAAGGTTTTCTCACACGGTCGTCCTCCAACAATAACAACAACACTATTCCACAGGAACTAATTGGTAGGGCGTGTTTCGACGACTTTGTTCCTTTGGTTTTCCAACAAGTGGGAGCAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAGTGCGGTGTTGTCGTTGCGAGGAAAAGATTATACAGAATGAACCGAATAATGCATGAGCTGGCGAGGGTGGTGAGTACTGTGGAGAACGTAACCGTGGATTGGGAGGGGAAGAGAGTCAACGAGGGGATGCTGCGAGCCTCGTTCGATTTCGCCTTGGACCTTTCGTGTGGGATCCCAGATTCGGTGTTTGAGAAAGCGAAGAAACTGAGTAGCATTCTTTTGTTGCGTTATAATAATTCCAACGCTACTTGTTGTAACAACAAGTTGTTGTTGACGCGGATGCTTTCACACGAAACGCTGAAACTTTCCCAGTGCCACGCCCTCAAGGAATTGCCCAAAGACACGAAGGATTTGAGTTCCCTCAGGCATCTTGACATAGAAGGATGCTTGAATCTCACTCACATGCCAGCTGGAATGAGTAAGCTCANTTGNTTACAGACACTGCCNCTTTTTGTGGCCACAAAGAACCAAGTCATGGGAGGNCTCAGAGAACTCACGGATCTCAACGACCTCAGAGGGAACTTGGANATTTCACATCTGGAGCAATTCAAGTTCTCTCCATCCAAGGAGGAGGCTAAAGATAAGTTTTTGAAAAGCAAACAACACCTTCGGTGCCTGAGTTTAAGATGGGACCACGATGAGGAAGAAGAAGAGGAGGAGGTTATTAATATTAAAGGAGGATCAAGCGGTAGTACTGTCGATGATGAGATCATCTCACTTGAATATCTTGAGCCACATCACAATCTGGGAGTGCTATTCGTTGCAGGGTATAATGGTAACACGTTTTCTAACTGGCTCTCTTCCCTTCAATACCTTGTTAAGTTTAGCTTGAACGATTGTCCCAAATGCCAATTTCTCCCACCACTGGATCACCTCCCACACCTCAAGGTTCTCCAGCTTAGAAGGTTGAACTCCCTGAAATTCATTGCAAAAAACACCGAAGCCTCCTCTCAGTCCTCTGGCTCTAGTACTAGTACTAGTACACCATTCTTTCCATCCTTGAAGAAACTTACAATATCGGATTGTCCGAATCTCAAAGGTTGGTGGGAAGATGACATAGGGAGAAACGATAGACCATTCTTTACTTGCATTTCCATATTAGATGTCCAATACTGTCCTAAATTAGCTTGTATGCCGTTGTATCCTTATATTGATGAAGNGCTGGTCCTGGTGGACTCCAACGTGACATCAATATTGGAAACAATGCATGCTAACACTTCAAAAGCCGGAATCCTTCCCTTCTCCAAGTTGAAGTCCATGTTAATTGCGCGTAATGGTGAAAAGCCTCCACCGGAGAGNTGGCTTAGAAACTTCACTTCCCTTGAGAAACTCCACATTCGGGAATGTTCTCAACTAGAGTCTCTGCCCCAAGGTTTCAAGTCTCTGACCTCACTCCTGTTTCTCACCATTGAGAGGTGCCCGAAACTTGATCTTGGTTTTGTCAGCTCCAAGAATGAATGGGAGGGTCTAAAAAACCTTCGTTCTCTCACACTAAGGGACATTCCAAAACTCAAGTCCCTTCCGAGGGAAGTTGGGAGCCTCACCTCTTTGCAAGATCTCAGGATTTATGAATGTTCTGGCTTAACTTGTTTACCGGAAAGCATAGGTANCCTCGCCTCACTTGGTAAACTAGTGATTTCTAAATGCAAAAGTTTGAAATCGCTGCCCAAAGGAATGGAGAAGCTCAAGTCTCTACATACTTTGATTATTATGGATTGTCCCTTGTTAATGCCAAGGTGTCAGCCGGAGACTGGTGATGATTGGCAACAAATTGCTCATATAAAAAATATACATGTGAAGGACACTCCTGAACACTTAAGGGACTTGTGA

Protein Sequence

>Glyur000688s00027118.1
MDASILADTISDILRWTSSLKPLPIYLSAKDISHLKNHLEDIRAKVKKAKQINHYSSSQTSEEVQLWLQNVKGVIIDLKDLMEEDLHNQESSSTGSRLKVKYLVKNAAKEIKRLSEKAQTMSFPEEEEKEAGEMNSRKRYDEFAKGVVAVGRENEKKKVIDQLLNGDVAVPVVAIVGVPGIGKTKLARLVYEDKQVNAHFSFQTWVDHLRHETFDVESVAESVTKSATSSTEGQRRYLLVLDDLRIEIDGECLEKLKQKLTEAGLTSGAILITTRSNLVANNIAGVAARHVLQGLNEKDSRALFQRVHREPVLSNDVVWEIVRECGGVPLAIIILARLRNNRRGTRGNNSSVPVEEEFLQELKFTYYEDLPTYQKLCFSYCSLFPPDYLFDAERLIQLWMAEGFLTRSSSNNNNNTIPQELIGRACFDDFVPLVFQQVGAEEGEEEEEEEEEDECGVVVARKRLYRMNRIMHELARVVSTVENVTVDWEGKRVNEGMLRASFDFALDLSCGIPDSVFEKAKKLSSILLLRYNNSNATCCNNKLLLTRMLSHETLKLSQCHALKELPKDTKDLSSLRHLDIEGCLNLTHMPAGMSKLXXLQTLPLFVATKNQVMGGLRELTDLNDLRGNLXISHLEQFKFSPSKEEAKDKFLKSKQHLRCLSLRWDHDEEEEEEEVINIKGGSSGSTVDDEIISLEYLEPHHNLGVLFVAGYNGNTFSNWLSSLQYLVKFSLNDCPKCQFLPPLDHLPHLKVLQLRRLNSLKFIAKNTEASSQSSGSSTSTSTPFFPSLKKLTISDCPNLKGWWEDDIGRNDRPFFTCISILDVQYCPKLACMPLYPYIDEXLVLVDSNVTSILETMHANTSKAGILPFSKLKSMLIARNGEKPPPEXWLRNFTSLEKLHIRECSQLESLPQGFKSLTSLLFLTIERCPKLDLGFVSSKNEWEGLKNLRSLTLRDIPKLKSLPREVGSLTSLQDLRIYECSGLTCLPESIGXLASLGKLVISKCKSLKSLPKGMEKLKSLHTLIIMDCPLLMPRCQPETGDDWQQIAHIKNIHVKDTPEHLRDL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00688	9771	13157	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000688s00027118.1	PF00931.17	NB-ARC	152	408	3.80E-29
Glyur000688s00027118.1	PF00560.28	LRR_1	574	594	0.34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.629
SRR1783600	control	25.339
SRR1783602	moderate drought stress	25.228
SRR1811619	moderate drought stress	25.771

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.192
DRR006520	Root Summer glycyrrhizin high producing strain	7.370
DRR006521	Root Winter glycyrrhizin high producing strain	3.516
DRR006522	Root Winter glycyrrhizin high producing strain	3.194
DRR006523	Root Summer glycyrrhizin low producing strain	0.034
DRR006524	Root Summer glycyrrhizin low producing strain	0.034
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.651
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.410
SRR2868004	Drought Stress (root)	9.550
SRR2967015	Control (root)	15.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.250
SRR9715740	Leaf	0.523
SRR9715741	Leaf	0.531
SRR9715739	Root	24.997
SRR9715742	Root	36.744
SRR9715743	Root	35.169

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.576
SRR8749028	MeJA induced 9h	7.926
SRR8749029	MeJA induced 9h	3.217
SRR8749030	Uninduced	1.163
SRR8749031	Uninduced	1.701
SRR8749032	Uninduced	2.564

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.860
SRR8400027	Control - Root	32.782