Gene detail

Gene detail information of Glyur000687s00031812

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13680.1	6.00E-112	PLC-like phosphodiesterases superfamily protein
NR	XP_003551764.1	0	PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max]
COG	YP_001869900.1	5.00E-18	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q93XX5\|Y5713_ARATH	8.00E-121	PI-PLC X domain-containing protein At5g67130 (Precursor)
trEMBL	tr\|K7MUZ9\|K7MUZ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G50490.2}

Sequence

Transcript Sequence

>Glyur000687s00031812.1
GTTTCCTTTTTGTTCGTTTATCATTATACTCTAATCGCTCTCTATATATGGACAGGTGAAACCTTTCCCACGATGAATATTTTTAATTTAAAACTTTGCCAAATTAATAATACACCTGTGTAACGGCTTCGCCTTTGATTTAGCTTAAAAGTCTACGAATATTCCAACAACGAAAGTCACCTTATGATATGAACANGAGAATTCTATGAATCTACTTCGTTTTCTCAGCCAAGACAAGACCCAAAAAAAAAAATCCATCATCACTCAATTATTATTCATATAAATTAGACCTATCCTTTTGTCATTCTATTCTCTTTGGTCATTATCTACATGGGTTCTCTTCCATGCTTGCTTATGGTAATTATTCTTCCATTGGTTTACAATGTTGCTCCTGCTGCTGCTGCTGCTGCTGCTTGTTCTAATGGAGCTTGCAGGCTTCTTGATGAGTGCTCTTCTGATGGAGACTGTGAAGCTGGGCTCTACTGTTTCTCCTGCTCACTTGGGTTTGCAGGCTCTAGGTGTGTGAGATCATCTGTCACAGATCAATTCAAGCTCTTAAATAACTCTCTACCATTCAACAAATATGCATTTTTGACAACGCACAACGCTTATGCCATTGATGGGGAGCCATCTCACACGGGTGTGCCTCGAGTTACTATCACCAACCAAGAAGACAGCATCACACAACAGTTAAATAATGGAGTTCGGGGACTAATGCTAGATACATATGATTTTGATGGAGATGTGTGGCTATGCCATTCATTTGGAGGCCAATGCCATGACTTCNCAGCATTCGAACCTGCTAATGACACACTGAAGGAAATTGAGGCTTTTTTATCAGCAAATCCAACAGAAATTGTCACACTTATCTTGGAAGATTATGTTCTGCTCCAAATGTATTGGTTTCCATTGACAAGCATGCCAAGGAATGGTGAAGATTGGCCTCTAGTGAGTGATATGNTTGCCAAAAACCAAAGATTACTAGTGTTCACTTCTATCACGTCTAAGGAACAAAGTGAAGGCATTGCTTACCAATGGAATTTCATGGTTGAAAATCAGGCAGAATCATCTCCTCTTAACGACAAAAGCAAATCCTTGGTGTTGGTGAACTATTTTCGAACCACTCCAGTTAAGCCAATCACATGTGCAGATAATTCTGGAGAGCTCATTAACATGTTGCACACTTGTTATGGTGCTGCTGGTAACCGGTGGGCTAATTTTGTTGCTGTCGATTATTACAAGAGGAGTGAGGGAGGAGGGTCATTTCAAGCTGTGGATACTAGCAATGGGAAGCTATTGTGTGGATGTGATGATGTTCACACATGTGTGCCTGGATCAACTTCACAAGCATGCTCACCACCATAGAAAGCGTTGTAACAAGGGCAACAAAGTTATTCAGACATTAAATTGTTGTGGACTTTCAGTCATTAAAAGCATTATTCCTTATACATTGTATCATGCACTCCAGNCTATTCGGAACAGTTGTGCAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00687	107984	111348	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

molecular_function
GO:0008081 phosphoric diester hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.971
SRR1783600	control	3.852
SRR1783602	moderate drought stress	4.072
SRR1811619	moderate drought stress	4.080

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.447
DRR006520	Root Summer glycyrrhizin high producing strain	3.135
DRR006521	Root Winter glycyrrhizin high producing strain	2.235
DRR006522	Root Winter glycyrrhizin high producing strain	2.272
DRR006523	Root Summer glycyrrhizin low producing strain	2.706
DRR006524	Root Summer glycyrrhizin low producing strain	2.748
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.971
SRR2868004	Drought Stress (root)	15.918
SRR2967015	Control (root)	15.658

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.144
SRR9715740	Leaf	4.488
SRR9715741	Leaf	9.699
SRR9715739	Root	1.181
SRR9715742	Root	1.719
SRR9715743	Root	1.659

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.428
SRR8749028	MeJA induced 9h	5.713
SRR8749029	MeJA induced 9h	11.339
SRR8749030	Uninduced	14.842
SRR8749031	Uninduced	40.307
SRR8749032	Uninduced	37.824

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.437
SRR8400027	Control - Root	20.239