Gene detail

Gene detail information of Glyur000686s00030157

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14030.2	3.00E-43	selenium-binding protein 1
NR	XP_003531213.1	1.76E-54	PREDICTED: selenium-binding protein 1 [Glycine max]
COG	YP_007092268.1	6.00E-24	selenium-binding protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|O23264\|SEBP1_ARATH	1.00E-47	Selenium-binding protein 1
trEMBL	tr\|I1KS58\|I1KS58_SOYBN	7.00E-55	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G11400.1}

Sequence

Transcript Sequence

>Glyur000686s00030157.1
ATATAGTTAGGAATTGTCTTGAATGAGAATCAACTCACATTTTNAGAAATACTATCTCATCTCTAAAACTCTATTCTCTCTACAATCATCATCTCTTTTACACCGGGTTCCATTCTAAATTGTTGGATCCCCTGCTCTTGAGAATTGGGTTTTACCGGATTCTTCCCTAAAATCCAAGTTCCCCGTCTCAATTGGTATTCAGAGCCTTCGATCTGGTGCTTACTCATGATTGCTGTTACGCAGAATCAACTGGAAATTGAAATGATGGAGTGTCAGATGTTACAGATGGAGCATCGGGTGTTAGAGAAGCTCCCAGAATCACAGGAAAAATTGCTGACCCATATCGATAAATTCATGACAGGTTTAGACGAAATCAAATACCTACTCAGACAACGATTGGGACTCCCACAACAATCTCTCGCACTCCAACAAGGGTTTCGGGAGCAGATCTCACCCAACCACAACAAGAGGGTTCATCAGAGACTCCACAGGATTTAACTCAAACTGGGAAAAGTGAAGGGTTTCATGGAGTTTTTGGAGCATTCCAGCATTCTCTCACGTGTACCCAGAAAATCCCGTGCTCAAACCAAACTCACAACCGAACATGGGTTTCGGGAGTAGATTTCACCCAAATCCCACCCCACAATGTTTCGAAACCACTGTTCGTCGCTCCAATAGAAATCAAAGAAGCCGCAACTACGAAAACAACACAATCGCACGAGCTCCTCATCGAAGGAAGCAATTTCGCCGCCGTTTCCGATCCAGTCGTGGTGGTCGCTGACCAACTAGAGGAGACTACCCCTGAAGTCTCCAAGGATCCAACACCACTGTTGTTCCCTCTAAATCCTTCGGCACCAGACCCACCGACAGCGACGGTTGGGTCATCGATAGAGAAAAAGTCCACGCTTAATCTCTGGTTGTCTGCTCCTCCATAGCCAAACCCACCGAACACCAACTTTACTAATTTCACGAAGACTGAAACCCCATTGAAGGTGCAGATGAAGTTCGCAACAGTCATCTCTTGGTATTTGGTAAGGAACTTGAGAGAGGCAGATCCAGAATTGGATCGGGAGAAGCTCAAACGTACCTTGTTGGATGGATCGCTGCTCCCTCCATCATTGGACACCACTTCTGACACCTCAAAGGGCCATAGAATCAACATGGTTGCTATTGGCTTTCCAACATCTAAGATGGATAATATTTCTCTGTGCGGTGAACACCTACCATATGGAAATTGCGTTGAGGTTCAAAAAACTAAAGGAACTGGTGATAAAATTATGAAGAAGCAAGATCAGATTTATTGGGTGTGGCAAAAGTGTATATCCAATGCATGGAAGGACTTAGTAGGATGGACTTTTGGTCTTCAAACCATATTTACAAAATCTAGGAGACAACGAGAGTCTACATCCTTAAGAAAGGTATTTTTTGTTCTTATTGATGTTGGATGGCGTTCAAATACTGAATATGTTGTTGTCAAATTGTATGGCTCAAGACTTCCATTGCCTCTAACAGTAGTTTATCATAAATTGCAACCAATAAATGCTTCTCATTATACGTTCTTGCAAGCACTTTTTGGACATGAAAATTCGGTGGGAGTACTGGGTGAAGTGGAAATTCTTCTGTTAGGAAGTGATGTCATTGTTGTAGGCCTTTGCAGTTTAAGAAATGAGGTTGCAACATCAGTGAAATCATTGAAAGTGCAAAACTGGAGACTTCCAGATATGCCTAGGCTTATAACTGATTTTTTGATTTCTCTTGATGATTGGTTCCTACAACACAACATTGAGGACTCAAAAAATCTTGTCTTGACTGGCCGAGTATGGGATGGGGGATTACTCCAAAAAGGAAGCCCTATAGTAGCTATAAAAGAAGATGGCAGTACTTGGCAAGCTGATGTTCCATACATACAGGGACATAAGTGGAGAGGAGATTGTGGGACATTAGTGGAGATGTACATGATCCACTTGGTGATGGTGGTGGGCTTCTTGAATTGGCAGAGTTGTCTCTTGATGAACCAGAAGAAAGGGTCCTACATGTTACAGATTGATGTTGATACTGAGAATGGTGGCCTGAAAATTCACCCAAACTTCTTTGTTGACTTTGGATATGAGCCTAATGGCCCCTTCCTTGCCCATGAAATGAGATATCATGGTCCTTCGTGTAGGTTGATGCAGAAAAATATTTCACTCACTTCAACCTGTCCAAGCCATTATGTTGGCATAATCTTCTGTGAACCTTCAACTACACCTTATCCAGGATATATTGATGATGCAGCCTATGATATTCCAGGATACATGTTCCACGTGCCTACGATCAGGCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00686	64042	68194	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007005 mitochondrion organization

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0008430 selenium binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000686s00030157.1	PF12483.3	GIDE	125	229	1.90E-11
Glyur000686s00030157.1	PF05694.6	SBP56	223	388	8.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.173
SRR1783600	control	3.122
SRR1783602	moderate drought stress	3.611
SRR1811619	moderate drought stress	3.656

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.690
DRR006520	Root Summer glycyrrhizin high producing strain	1.782
DRR006521	Root Winter glycyrrhizin high producing strain	3.063
DRR006522	Root Winter glycyrrhizin high producing strain	2.968
DRR006523	Root Summer glycyrrhizin low producing strain	3.467
DRR006524	Root Summer glycyrrhizin low producing strain	3.348
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.232
SRR2868004	Drought Stress (root)	9.157
SRR2967015	Control (root)	7.910

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.859
SRR9715740	Leaf	1.481
SRR9715741	Leaf	1.247
SRR9715739	Root	0.074
SRR9715742	Root	0.404
SRR9715743	Root	0.317

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.243
SRR8749028	MeJA induced 9h	1.656
SRR8749029	MeJA induced 9h	0.386
SRR8749030	Uninduced	1.555
SRR8749031	Uninduced	0.494
SRR8749032	Uninduced	0.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.445
SRR8400027	Control - Root	3.481