Gene detail

Gene detail information of Glyur000686s00030156

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26640.1	0	3-ketoacyl-CoA synthase 11
NR	BAF98214.1	0	CM0216.300.nc [Lotus japonicus]
COG	NP_285649.1	8.00E-16	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|O48780\|KCS11_ARATH	0	3-ketoacyl-CoA synthase 11
trEMBL	tr\|B0BLH8\|B0BLH8_LOTJA	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000686s00030156.1
ATGACTGGCTGTGATGCTAACGGTCAAACCAGGCCTGCGCCGCCCGTTGAAGATTATTATATAGGAGGGAAAAAAATGGCAGAGGCAAAACCAGATACACCCTTGATGCCGCCATCTTCGCGGAACCTTCCAGACTTCAAAAAATCTGTTAAATTGAAGTATGTGAAGCTTGGTTATCATTATGTGATCACACATGGGATGTACCTCTTTCTTTCTCCCCTTGTGGTGTTAATTGCTGCCCAGCTCTCCACTTTCTCCCTCAAAGATCTCTATGATATCTGGGAGAATCTACAATACAACCTGGTATCTGTCATTATTTGCTCCACACTCCTTGTGTTTTTAACCACACTGTACTTTATGACACGCCCCAGGCCGGTGTACCTCGTTAATTTCTCATGTTACAAGCCTGAGGAAGCTAGGAAATGCACAAAAAGGAAGTTCATGGATCACTCCAGGATGAGTGGTTTCTTCACAGATGAGACCCTTGAATTCCAGCGAAAGATACTCGAAAGGTCCGGTCTTGGGGAAAATACTTACTTCCCAGAAGCAGTCCTCAACATTCCACCCAACCCTTCAATGACAGAAGCTAGGAAAGAGGCTGAGGCGGTTATGTTTGGTGCCATCGATGAGCTATTTGGCAAGACATCGGTGAAGGCTAAAGACATTGGGATTCTGATTGTGAATTGTAGCCTGTTCTGTCCGACTCCATCGCTTTCCGCNATGATCATCAATCACTATAAGCTTAGAGGGAACATAAAGAGCTACAACCTTGGTGGGATGGGATGCAGTGCAGGGATAATCTCAATTGATCTTGCCAAGGATCTTCTTCAGGTCCATCCTAACTCCTATGCATTGGTTGTTAGCATGGAGAACATCACATTGAATTGGTATCCCGGGAATGATCGCTCCAAGCTCGTCTCGAATTGTTTGTTCCGTATGGGAGGGGCTGCGATTCTTCTTTCCAACAGGGGCTCTGACAGGAGAAGATCCAAATACCGATTGGTCCATACCGTCCGCACCAACAAGGCTTCCGATGACAAGTGCTTCAGCTGTGTCACACAAGAAGAGGATGACAATGGCAAGGTTGGTGTTACTTTGTCAAAAGACTTGATGGCAGTTGCAGGTGATGCTTTGAAGACAAACATCACCACANTGGGGCCTCTTGTCCTCCCAACATCCGAGCAGCTACTGTTCTTCGTGACATTAGTCGGGAAGAAACTCTTCAAGATGAAGATCAAGCCTTATATTCCGGACTTCAAGCTAGCTTTCGAACATTTCTGCATCCATGCCGGTGGCAGGGCTGTTTTGGATGAGCTGGAGAAGAACTTGCATCTGTCTCCTTGGCACATGGAGCCGTCAAGGATGACGCTGTATCGATTCGGAAACACCTCCAGCAGTTCACTTTGGTATGAATTGGCTTACACAGAAGCCAAGGGAAGAATAAAGAAGGGAGATAGGACATGGCAAATTGCATTTGGTTCCGGATTCAAGTGCAACAGTGCAGTGTGGAAGGCTCTCAGGACCATCAATCCTGCAAAAGAGAAGAGCCCTTGGATGGAAGAGATCGACCAGTTCCCAGTTGAAGTTCCAAGGGTTGCAGCCATCTAAATGATGCCAGTTTAAGAAATATTTTTTATTTTTTATGTATCAGCTTTAGGGGGTAGCNGTTAAACTGGTGGAAGCTGATGAGCTTTAGGTGGTATATGGCTTGAAGGTTAGGTTTTGTTGAATTCAGTTTAGTCAAGGTCTGGTGCATCAGTGCATGAGCTTTTGGACTGCTGGGTTTCTCTGTGGTTTATTGCTCTGTGGTAGTGATTCATTTGCCTGATTCCATTGCAGGGATACATTTACAAATTCTTTCGTGTATCGAGTTTGAAAAATCCATACATTCTTTGGTTAATAATAGCTACTAAAGGTGTTTTTCCACTTCATTGACCCTTNAACTTACAGTCGTTGCCAACCAGTTAACAAACTGAAATGTTGGTGCTTACATTAGCAATTCATATTCCCACCTCCCACCTTTATTTTACGTTTTTCTTTTCNTTTTTCAAATAAACTCTCAAATTCGTCCATGTGAATTGCAAAGTAGAATGTCACGCAATTTGTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00686	55258	58415	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000686s00030156.1	PF08392.7	FAE1_CUT1_RppA	118	407	1.10E-144
Glyur000686s00030156.1	PF08541.5	ACP_syn_III_C	424	504	4.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.223
SRR1783600	control	8.286
SRR1783602	moderate drought stress	7.078
SRR1811619	moderate drought stress	6.943

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.830
DRR006520	Root Summer glycyrrhizin high producing strain	56.547
DRR006521	Root Winter glycyrrhizin high producing strain	0.633
DRR006522	Root Winter glycyrrhizin high producing strain	0.619
DRR006523	Root Summer glycyrrhizin low producing strain	235.046
DRR006524	Root Summer glycyrrhizin low producing strain	233.578
DRR006525	Leaf Summer glycyrrhizin high producing strain	85.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	85.248

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.602
SRR2868004	Drought Stress (root)	122.354
SRR2967015	Control (root)	113.572

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	307.121
SRR9715740	Leaf	427.371
SRR9715741	Leaf	422.505
SRR9715739	Root	301.664
SRR9715742	Root	279.126
SRR9715743	Root	272.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	154.562
SRR8749028	MeJA induced 9h	166.505
SRR8749029	MeJA induced 9h	89.736
SRR8749030	Uninduced	608.002
SRR8749031	Uninduced	185.142
SRR8749032	Uninduced	255.512

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.388
SRR8400027	Control - Root	112.161