Gene detail information of Glyur000685s00029734 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44590.2 | 1.00E-17 | 60S acidic ribosomal protein family |
| NR | XP_007027672.1 | 7.24E-36 | 60S acidic ribosomal protein P2-4 [Theobroma cacao] |
| Swissprot | tr|O24415|RLA2B_MAIZE | 3.00E-34 | 60S acidic ribosomal protein P2B |
| trEMBL | tr|A0A061F117|A0A061F117_THECC | 3.00E-36 | 60S acidic ribosomal protein P2-4 {ECO:0000313|EMBL:EOY08174.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00685 | 63015 | 64744 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000685s00029734.1 | PF00428.14 | Ribosomal_60s | 18 | 112 | 4.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.991 |
| SRR1783600 | control | 31.865 |
| SRR1783602 | moderate drought stress | 24.249 |
| SRR1811619 | moderate drought stress | 24.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 117.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 52.437 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.459 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 86.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 84.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 405.456 |
| SRR2868004 | Drought Stress (root) | 218.955 |
| SRR2967015 | Control (root) | 197.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 165.529 |
| SRR9715740 | Leaf | 137.222 |
| SRR9715741 | Leaf | 116.078 |
| SRR9715739 | Root | 286.825 |
| SRR9715742 | Root | 198.081 |
| SRR9715743 | Root | 207.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 373.448 |
| SRR8749028 | MeJA induced 9h | 120.177 |
| SRR8749029 | MeJA induced 9h | 269.884 |
| SRR8749030 | Uninduced | 55.301 |
| SRR8749031 | Uninduced | 55.627 |
| SRR8749032 | Uninduced | 62.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 289.322 |
| SRR8400027 | Control - Root | 241.870 |