Gene detail

Gene detail information of Glyur000684s00037625

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	2.00E-102	S-locus lectin protein kinase family protein
NR	KEH16806.1	0	S-locus lectin kinase family protein [Medicago truncatula]
Swissprot	tr\|O81832\|Y4729_ARATH	3.00E-122	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A072TTD3\|A0A072TTD3_MEDTR	0	S-locus lectin kinase family protein {ECO:0000313\|EMBL:KEH16805.1}

Sequence

Transcript Sequence

>Glyur000684s00037625.1
ATGGCCAATCTTCCCGCTATGCTAGTTATTACTAACCTACTATTATTATTCTGTCAAATTTCCTCTACAACTGATAAAATTACCCAATTTGAGTCACTTTCTGATGGCAACACCTTGGTTTCTAAGGATGGAAGGTTCGAGATGGGTTTCTTCAATCCTGGCAATTCATCAAACCGGTACGTAGGAATCTGGTACAAANACATCTCGGTTAGAAGAGTTGTTTGGGTTGCCAACCGTGACAATCCAACCAAAGACAACTCCAGCAAGTTGATTATAAGCCAAGAGGGAAACCTTGTGCTTCTCAACCAAAACCAGTCTATTCTCTGGTCAACAAACACAACAACAACAACAACAACAAAAAGGGCGTCGAGTCCCCTGGTGCAACTCATGGACAACGGAAACTTAGTGCTCAGAGAAGAGAAGGAGAACAACAATAATGAAGAAAGCTTCTTGTGGCAGAGCTTTGACCACCTTTCCGATACATTATTACAGGGAATGAAGCTTGGATTGAACAAAAGAACTGGTCTTAATAGGCTTCTAACATCTTGGAAAAATTGGGAGGATCCATCTTCAGGATACATGACTTCAGGTATGGCACTTACCAACAATCCCGAAGACCAAATTTGGAAGGGCTCAGCTGTATTCTATAGGTCGGGACCTATGATTGGTGCTCAGTCCAATGGATTNTTCGGGTTGAGGAGTAACCCACTTTTTGATTACAATTTTGTCAACAACGAAGATGAAGTGTATTATACGTTCTCACTCAAGAATAGTTCTCTGATTTCTATACTCGTTTTGAACCAAACTCTTTCTTTTCGTCAACGCCTTGTTTGGGATCCTGAATCCAGAACTTGGAATACTTACCAATCTTTACCACAAGATAGTTGNGATGTTTATGATGTTTGTGGCGCAAACGGAAGATGCGTTATTGATGGATCGCCGATGTGTCAGTGTTTAGATGGGTTTAAGCCAAAATCACCAGAACAGTGGAATGCGATGGACTGGTCACAGGGATGTGTGCGCGGTGGAAATTGGAGCTGTGGTGTCAAAAAAAGAGATGGTTTTCGAAAATTTGTTGGGATGAAATTGCCCGATACTACAAATTCATGGATTGATGAAAACATGAAGCTCGAAGACTGCAAGGCCAAATGCTTGGAAAACTGNTCATGCACGGCTTATTCAAACTTCGACACAAATGGAGCAGGGAGTGGTTGTTCTATCTGGTTTGGTGATCTTGTTGATTTGAGAGTTTCACCAAGCGGGCAAGACCTATATGTTCGAATGGACGCTTCAGGTATGACCGATAAAGGCTTTGATATTCTTTTTAAGTTTCTTGTTACATTGATTAGAGGGCTATTAATTGCTTTTGTTTGGGAATCACAACTGATCCATTTCTCTGTCAAGCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00684	56158	57567	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000684s00037625.1	PF01453.19	B_lectin	72	190	2.50E-31
Glyur000684s00037625.1	PF00954.15	S_locus_glycop	216	326	4.10E-26
Glyur000684s00037625.1	PF08276.6	PAN_2	347	415	2.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.130
SRR1783600	control	0.130
SRR1783602	moderate drought stress	0.108
SRR1811619	moderate drought stress	0.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.139
DRR006520	Root Summer glycyrrhizin high producing strain	0.153
DRR006521	Root Winter glycyrrhizin high producing strain	0.079
DRR006522	Root Winter glycyrrhizin high producing strain	0.077
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.198
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.550
SRR2868004	Drought Stress (root)	20.572
SRR2967015	Control (root)	16.067

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.173
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.459
SRR9715739	Root	0.000
SRR9715742	Root	0.321
SRR9715743	Root	0.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.406
SRR8749028	MeJA induced 9h	0.589
SRR8749029	MeJA induced 9h	0.562
SRR8749030	Uninduced	0.529
SRR8749031	Uninduced	0.179
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.693
SRR8400027	Control - Root	0.660