Gene detail

Gene detail information of Glyur000683s00025156

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32910.1	5.00E-133	HXXXD-type acyl-transferase family protein
NR	KEH33678.1	0	HXXXD-type acyl-transferase family protein [Medicago truncatula]
Swissprot	tr\|Q9FI78\|HST_ARATH	6.00E-36	Shikimate O-hydroxycinnamoyltransferase
trEMBL	tr\|A0A072UX74\|A0A072UX74_MEDTR	0	HXXXD-type acyl-transferase family protein {ECO:0000313\|EMBL:KEH33678.1}

Sequence

Transcript Sequence

>Glyur000683s00025156.1
ATGGGTGTTATTGCAAAGGGAGATCAGTGCTTGAGAGTGAGTGTGACCAANGAGGAGGTGGTGGCAGCAGTGCTACCAATGCAACAGCATTGGCTCCCACTCTCCAACCTCGACTTACTTCTACCTCAAGTTGATGTTGGGGTATTCTTCTGCTACAACAACAACCCCATGTCCATGTCCTTTGAATCCATGGTGGGGTGTCTCAAGAAGGCTTTGTCTCAGGCTCTGGTCTCCTACTATGCCTTTGCGGGTGAAGTGGTGNCCAACTCTGTGGGTGAACCTGAACTCCTCTGCAATAACCGTGGGGTTGATTTTGTTGAGGCTGTGGCAGATGTTGAGCTTCATTGCCTCAACTTNTATAACCCTGATGACACCATTGAAGGAAAGCTCGTTCCCAAGAAGAAACGTGGCGTGCTCGCTGTCCAGACAACTTCATTAAAATGTGGTGGGGTAGTAGTGGCATGCACATTTGATCATCGCNTAGCAGATGCCTATTCAGCAAACATGTTCCTAGTATCATGGGCCGAGTTGGCCCGGCCCACAAAGCCCACCAGCATTCCCCAACAACCATGCTTCCGTCGCTCCCTCCTCAACCCTCGCCGTCCAGGTTCCATCCACCCTTCCCTCCACCACATGTACATTCCCATCTCCGACCTCCCTCCACCTCCGGAAACCGCCACCACCACCCCATTACTCAGCCGCATTTACTATGTCACCGCGGAGCAGCTCCACCGCATACAGTCACTCGCCACCGCCACTAGCAACAATGGTAACTCCAATAATAAGAAGCTCACAAAGCTCGAGTCTTTCTCTGCTTTTCTTTGGAAGCTTGTTGCCCATGCAACTTCAAGAGACGTTAGTGGCGGAAAGACCAAAAGGGTCGTCGCCAAAATGGGTATAGTGGTTGATGGAAGAAAGAGGCTCGGTGATAAAGGGAGAGAAGAATCAGCAACAATGATGGGATGCTATTTTGGGAACGTTCTTTCCATACCCTTTGGTGTGAAACCGGTGGAGGAGCTTATTGATAAGTCATTGGGTTGGGTGGCGAATGAGGTTCGTGATTTCGTGGCGGTAGCGGCTACGGAGGAGCACTTCTTGGGGCTAATTGATTGGGTGGAAGCACACCGGCCGGTCCCCGGGTTGGCGAGGATTTATTGCAGTGGCCACGATGACGAGGGACCGGCTTTTGTGGTGTCCTCCGGGCAGAGGTTCCCGGAGGACAAGGTGGATTTTGGGTGGGGGAAGGCTGTGTTTGCCTCTTATCATTTTCCTTGGGGTGGTGAAGCTGGTTATGTGATGCCAATGCCAAGCCCTTTGGGGAATGGTGATTGGGTTGTGTACATGCACCTTGTGAAGGAGCATTTGGAGATCATTGAGTCTGAGGCTTCTCATGTCTTTAGGCCTTTAACTTGGGATTATCTAAATCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00683	100954	105202	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000683s00025156.1	PF02458.10	Transferase	12	464	8.80E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.033
SRR1783600	control	7.057
SRR1783602	moderate drought stress	6.459
SRR1811619	moderate drought stress	6.183

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.224
DRR006524	Root Summer glycyrrhizin low producing strain	0.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.890

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.385
SRR2868004	Drought Stress (root)	41.192
SRR2967015	Control (root)	41.103

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.263
SRR9715740	Leaf	0.042
SRR9715741	Leaf	0.346
SRR9715739	Root	26.195
SRR9715742	Root	8.068
SRR9715743	Root	10.723

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.875
SRR8749028	MeJA induced 9h	0.474
SRR8749029	MeJA induced 9h	0.965
SRR8749030	Uninduced	0.004
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.183

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.413
SRR8400027	Control - Root	56.635