Gene detail

Gene detail information of Glyur000683s00025152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07900.1	1.00E-22	Mitochondrial transcription termination factor family protein
NR	XP_003530716.2	8.62E-109	PREDICTED: uncharacterized protein LOC100818835 [Glycine max]
trEMBL	tr\|V7BMI8\|V7BMI8_PHAVU	3.00E-72	Uncharacterized protein {ECO:0000313\|EMBL:ESW18248.1}

Sequence

Transcript Sequence

>Glyur000683s00025152.1
ATGGGGTTTGATCCTTTGAAGTCATATTTTGTTTTGGCACTTCAATATCCCCAGTATATGATGATCTCAGAAAAGAAGATTGTGAAAATACTGAGCTTCTTGGTGAATGATATGGGCTTTACCCCAGAATACATTGCTAGAAGCCCTGGAATTCTGGACCGCAGCATGGAGAGGACAATTTTCCCTAGATTTGCAGTTGTTAAAATTTTAATATCAAGAGGTTTGATAAAGAGTGATTTGTGCCTAAGTAGCTTTATTTTGATTGGTGAGAAACAGTTTTTGGNGAGATATGTGATCCGATTCCAGAAAGATGTGCCATTGTTATTGGAGGCATATAAAGGTCAGAAGTTAGCTTCTAGTTCTAGGGCCCCTCAATTTAGTGTTCATATTCACCACAATGTTTTTCCTCTTTGCTTCACTTGTCGTGGTTTATCTGTTTCCCACACAAACCACCACCAAGGTGGCTCCTTTACNGTGTATAGCCTCATCAACGCAAGTGGGTTGTCCCCTGAAATGGCCCTTAAACTCTCCAAAAGGTTGGAACGGAAAAACCCAGATGGGCCAAATGCTGTGATTGAACTTCTCAGGAACTATGGGTTCTCTGANTCCCAGTTATCTAGCCTTGTTAAGATACGCCCTTCTGTGCTTTTAACAAAACCTGACAAGACCCTTNTGCCAAAACTCAAGTTCTTGCATTCCATTGGGGCTTCAACCACTGATGTCCCCAAAATCCTCATTGGGAACCCTTCCTTTTTGAAAACAAGCTTGGATAAAATCCTTATCCCCAGTTATAAGATCGTCAGGAGTCTAGTTCGCAATGATAAGGAGGTAGTTTCAACTTTCAAGCATGGGTCATGGTCCTTTCACTGTGGTAGGTTGTTGAATGATTCAGTTCCAAACATTGGGGTTTTGAGGCAGCTTGGCCTGCCTCAAGGTTCCATTTCCCTCCTGTCAAGCTCTTTGATAAAGAGTGATTTCTCCATAAGTAGCATTATTTTGATTAGTGAGAAAAGGTTTTTGGAGAGATATGTGACCCGATTCCAGAAAGATGTGCCACTGTTATTGGACGCATATAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00683	78046	83907	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000683s00025152.1	PF02536.9	mTERF	12	94	1.60E-08
Glyur000683s00025152.1	PF02536.9	mTERF	194	319	8.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.057
SRR1783600	control	3.876
SRR1783602	moderate drought stress	4.192
SRR1811619	moderate drought stress	3.819

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.217
DRR006520	Root Summer glycyrrhizin high producing strain	4.659
DRR006521	Root Winter glycyrrhizin high producing strain	2.047
DRR006522	Root Winter glycyrrhizin high producing strain	2.003
DRR006523	Root Summer glycyrrhizin low producing strain	3.327
DRR006524	Root Summer glycyrrhizin low producing strain	3.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.824
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.587

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.246
SRR2868004	Drought Stress (root)	5.177
SRR2967015	Control (root)	5.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.462
SRR9715740	Leaf	6.687
SRR9715741	Leaf	4.866
SRR9715739	Root	3.685
SRR9715742	Root	5.679
SRR9715743	Root	4.512

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.001
SRR8749028	MeJA induced 9h	2.194
SRR8749029	MeJA induced 9h	0.839
SRR8749030	Uninduced	0.332
SRR8749031	Uninduced	0.116
SRR8749032	Uninduced	0.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.380
SRR8400027	Control - Root	9.101