Gene detail

Gene detail information of Glyur000683s00025151

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19645.2	1.00E-100	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
NR	KEH33666.1	6.46E-173	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein [Medicago truncatula]
trEMBL	tr\|A0A072UW60\|A0A072UW60_MEDTR	2.00E-173	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein {ECO:0000313\|EMBL:KEH33666.1}

Sequence

Transcript Sequence

>Glyur000683s00025151.1
AATTAACAGATAATGAAGAAGAGTATTATTTTCCTATCATCACTTGACAAAAAGGGGAATGAAAAATGACGGTTAGCACTTGGCAGTTACATAACGATATTCCTCTGTTGGATATCCCAACCCAACAATCTCCAGGATCTTCATCCTATCCTTCTAGGGTTTTCAGAATCCCTCCAAATCAATCGATGCGTTTCTGAAACCCATTTCCCGAATGCATCTCAAAACGACGCAGTATAAGATCACCACTCCTCCGTAGTTTCAATTCGGCCACAAACTCTCGAAACCCAAAGATATATATCTCCGCAGCACAGTCTCGTTCGACTGGGTGACATGACGTGGAAAACAAAAAACTGAATATAGTTTATAAGAGATTTCTCAACCAAGGGGGTAGCGCTGCACTGTTGGCTTCTAAAGAAATAATGGCATTCCAATCTTACCAGAACCAGGCTAACATGTTCGTGAAGGAATATTTACTAGCAGACTCTTTGATTCCATATACTTCTGTTATTGGTGGCATTATTGTTTGCAAAATGGTCTACGATTTTACACAGCTTATTGGTACTAATTACTTTAAGAGCTATTCCAGCTTCTCAAAAATCCAACGTATTGAGTGGAATAACCGAGCTATATCAACTGTTCATTCCATTTTCATAACAGCTATGTCATTATACTTGGTGTTTTGCTCAAATTTATTTTCTGACAACCAGTCTACTGAACCTATTACAGTTCGAAACTCTTCATTGTCCACGTTTGCCCTCGGGGTTTCTGTTGGTTACTTCATTGCTGATCTAGGGATGATATTTTGGTATTTTCCTTCTCTTGGTGGATATGAGTATGTGACTCATCATCTGCTTTCTTTAGTAGCAGTAGCGTATTCAATNTTGAGTGGGGAAGGACAGCTTTACACATACATGGTCCTTATCTCTGAGACAACTACTCCAGGAATCAATTTGAGATGGTATCTCGATGTAGCTGGATTGAAAAGGTCCAAAGCCTATCTCATCAATGGGGTTGTAATATTCCTTGCTTGGCTGGTTGCCAGAATACTACTGTTCATTTACATGTTTTACCATGTCTACTTGCATTTTGATCAGGTTGAGCAGATGCACACCTTTGGGCAGATATTGGTAATTGTTGTGCCATTGGTGCTATCGGTTATGAACTTGGTTTGGTTTGCAAAGATTATTAAAGGCTTGAGGAAGACATTGGCAAAGAGGCAGTAAATAATCTGCTTAGTAGAACTTATTGGCAGAAAATTGTATAGATTACCCTGTTGATATTCGTCTCACCTTGCCTGATCTGCACTGAAAGATGTAACAGTATATATCCATTTATAGTTTTTATGTTCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00683	70119	74821	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000683s00025151.1	PF03798.11	TRAM_LAG1_CLN8	64	257	1.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.608
SRR1783600	control	2.583
SRR1783602	moderate drought stress	3.418
SRR1811619	moderate drought stress	3.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.501
DRR006520	Root Summer glycyrrhizin high producing strain	3.792
DRR006521	Root Winter glycyrrhizin high producing strain	8.715
DRR006522	Root Winter glycyrrhizin high producing strain	9.151
DRR006523	Root Summer glycyrrhizin low producing strain	4.612
DRR006524	Root Summer glycyrrhizin low producing strain	4.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.436
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.703
SRR2868004	Drought Stress (root)	8.382
SRR2967015	Control (root)	7.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.325
SRR9715740	Leaf	12.022
SRR9715741	Leaf	10.440
SRR9715739	Root	1.078
SRR9715742	Root	1.475
SRR9715743	Root	1.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.589
SRR8749028	MeJA induced 9h	4.079
SRR8749029	MeJA induced 9h	1.325
SRR8749030	Uninduced	5.539
SRR8749031	Uninduced	3.220
SRR8749032	Uninduced	1.695

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.966
SRR8400027	Control - Root	8.399