Gene detail information of Glyur000683s00025145 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36900.1 | 5.00E-71 | membrin 11 |
| NR | XP_007146277.1 | 2.95E-144 | hypothetical protein PHAVU_006G027100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SJL6|MEM11_ARATH | 7.00E-89 | Membrin-11 |
| trEMBL | tr|V7BNW0|V7BNW0_PHAVU | 1.00E-144 | Membrin {ECO:0000256|PIRNR:PIRNR028865} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00683 | 41594 | 44758 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000683s00025145.1 | PF12352.3 | V-SNARE_C | 188 | 253 | 1.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.508 |
| SRR1783600 | control | 22.756 |
| SRR1783602 | moderate drought stress | 35.434 |
| SRR1811619 | moderate drought stress | 35.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.619 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.269 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 32.538 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.825 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.141 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.939 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.315 |
| SRR2868004 | Drought Stress (root) | 18.054 |
| SRR2967015 | Control (root) | 20.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.963 |
| SRR9715740 | Leaf | 27.207 |
| SRR9715741 | Leaf | 42.850 |
| SRR9715739 | Root | 13.388 |
| SRR9715742 | Root | 18.049 |
| SRR9715743 | Root | 17.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.389 |
| SRR8749028 | MeJA induced 9h | 53.633 |
| SRR8749029 | MeJA induced 9h | 74.965 |
| SRR8749030 | Uninduced | 87.056 |
| SRR8749031 | Uninduced | 60.457 |
| SRR8749032 | Uninduced | 89.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.764 |
| SRR8400027 | Control - Root | 22.032 |