Gene detail

Gene detail information of Glyur000682s00024327.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63870.2	4.00E-169	serine/threonine phosphatase 7
NR	XP_003534225.1	0	PREDICTED: serine/threonine-protein phosphatase 7-like [Glycine max]
COG	YP_004458109.1	3.00E-24	metallophosphoesterase [Acidianus hospitalis W1]
Swissprot	tr\|Q9FN02\|PPP7_ARATH	0	Serine/threonine-protein phosphatase 7
trEMBL	tr\|K7LEW3\|K7LEW3_SOYBN	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}

Sequence

Transcript Sequence

>Glyur000682s00024327.1
AAAAGATAAAAAGATTTAGAAGAGAAATATACATGGGCGAGCAGAAACAATTTCAGATTCTTCTCGGCCACTCTGTTCCTCTTTACCATGACACTTCATACTGACTCAGCACCACCACCTTCTCCTCCACCGGATTCCACCACAGCCACTATCAACGGCGACACCACCTCAGAGGAAAACCCACCACCACCGTCTTCATCATCGCCGCCACCTCNGTTTCCAAGCCCACCATCCGAACTTGGAGTCCCACTATGGTGGCCGGAAGACGGGAACCTGAGCATGGAATGGATCGAGAACCTAATGTCGTGCTTCGATTGGTCTTCGAGGAACCTCCCTCCTTCAGAGTTCCCTTCTGTTCTCCCCGTTCACGTCTTCGACTCCCTCATCCTCATCGCTTCCAAGATGCTTCACAAGGAGCCCAATTGTGTCCCCATCGACCCCTTCCGACCCGAACCCGAACCCGATTCTTCTTCCTCCGCTGCCGCCTCTGTGGTGGTGGTTGGGGATGTTCACGGCCAATTGCATGATCTCCTCTTCCTCCTCCGTGATGCCGGTTATCCCTCGAGGGATCGAATCCTCGTTTTCAATGGCGATTATGTTGATCGAGGAGCTTGGGGCCTCGAAACTTTCTTACTCTTGTTGGCGTGGAAGGTATTCATGCCGCGTAACATATATTTGCTAAGAGGGAATCATGAATCGAAATACTGCACGTCAGTTTATGGTTTTGAGAAAGAAGTAATGGTAAAGTATGGAGATAAAGGTAAGCATGTGTACCGGAAATGTTTGGGATGCTTTGAAGGTCTTCCTTTGGCTTCTATTATAGCAGGGTGTGTTTACACGGCTCATGGAGGACTTTTCCGCTGTGTAACTGTGACACCTTCGAAGAGATTAAAAGGAAAGAAGAATCGTAAGATTAATGTTAATCCTGACAGAAAAAATCTCNCTCTTGGTTCCTTGGAAGAATTGTCCAAGGCTCGGAGATCAGTTCTCGATCCTCCTTGGGAAGGATCAAACTTGATTCCTGGTGATGTTTTGTGGTCTGATCCGTCAAAAAATCCTGGTCTTGCTCCAAACAAAGAAAGAGGCATTGGCTTGTTGTGGGGTCCTGATTGTACTGAAGAATTTTTGAAGAAGTACCAACTGAAGTTGATCATCAGGTCACATGAAGGTCCTGATGCTAGGGAAAAAAGGGATGGTTTTGATGGAATGGCTGAAGGATACACTATTGATCATATTGTGGATTCTGGAAAGCTGGTCACCGTGTTTAGTGCTCCAGATTACCCACAATTTCAGGCAACAGAGGAGAGGTATAACAACAAAGGCGCCTATGTTGTCCTTGAGCCCCCAAATTTCGACAATCCCATATTTCATGGATTTTCGGCTGTTACTCCAAGGCCAAAGGTGAATGCCTATTACGATTATGAAGAAGTGATAGACTCTGACGAAGATTTGGACTTGGCCTCCATGGTAACTGCCTGAGGGATTTTTGTGAGAAAGAAAATGTTAATAAGCAGATTTGTAAAAATTGTATTGTTATTTTTTGAAATACAGCTTTTGTCATTAAATTATAATTATTTATTATTTACTCAAATTAAACCAACCCACAGAAGCAATTACTAGATGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00682	109791	116327	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04460	PPP5C	EC:3.1.3.16	MAPK signaling pathway	map04010

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000682s00024327.1	PF00149.23	Metallophos	134	360	2.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.018
SRR1783600	control	19.461
SRR1783602	moderate drought stress	14.733
SRR1811619	moderate drought stress	15.217

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.729
DRR006520	Root Summer glycyrrhizin high producing strain	17.558
DRR006521	Root Winter glycyrrhizin high producing strain	10.540
DRR006522	Root Winter glycyrrhizin high producing strain	9.824
DRR006523	Root Summer glycyrrhizin low producing strain	15.878
DRR006524	Root Summer glycyrrhizin low producing strain	16.556
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.529
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.260

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.170
SRR2868004	Drought Stress (root)	21.024
SRR2967015	Control (root)	20.192

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.393
SRR9715740	Leaf	17.680
SRR9715741	Leaf	19.732
SRR9715739	Root	16.020
SRR9715742	Root	22.142
SRR9715743	Root	20.350

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.102
SRR8749028	MeJA induced 9h	9.708
SRR8749029	MeJA induced 9h	7.012
SRR8749030	Uninduced	4.057
SRR8749031	Uninduced	1.719
SRR8749032	Uninduced	1.833

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.157
SRR8400027	Control - Root	23.753