Gene detail information of Glyur000682s00024323 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06790.1 | 5.00E-62 | RNA polymerase Rpb7 N-terminal domain-containing protein |
| NR | XP_007134115.1 | 1.41E-113 | hypothetical protein PHAVU_010G020200g [Phaseolus vulgaris] |
| COG | YP_004780376.1 | 2.00E-11 | DNA-directed RNA polymerase [Pyrolobus fumarii 1A] |
| trEMBL | tr|V7AKM7|V7AKM7_PHAVU | 5.00E-114 | Uncharacterized protein {ECO:0000313|EMBL:ESW06109.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00682 | 82706 | 88974 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000682s00024323.1 | PF03876.12 | SHS2_Rpb7-N | 9 | 77 | 3.50E-10 |
| Glyur000682s00024323.1 | PF08292.7 | RNA_pol_Rbc25 | 79 | 193 | 2.30E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.021 |
| SRR1783600 | control | 13.286 |
| SRR1783602 | moderate drought stress | 16.213 |
| SRR1811619 | moderate drought stress | 15.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.692 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.867 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.190 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.716 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.030 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.116 |
| SRR2868004 | Drought Stress (root) | 14.213 |
| SRR2967015 | Control (root) | 12.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.983 |
| SRR9715740 | Leaf | 9.074 |
| SRR9715741 | Leaf | 7.366 |
| SRR9715739 | Root | 6.674 |
| SRR9715742 | Root | 7.127 |
| SRR9715743 | Root | 6.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.880 |
| SRR8749028 | MeJA induced 9h | 10.403 |
| SRR8749029 | MeJA induced 9h | 12.698 |
| SRR8749030 | Uninduced | 5.214 |
| SRR8749031 | Uninduced | 1.687 |
| SRR8749032 | Uninduced | 3.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.017 |
| SRR8400027 | Control - Root | 17.154 |