Gene detail

Gene detail information of Glyur000682s00024316

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48600.2	0	structural maintenance of chromosome 3
NR	AET03555.2	0	structural maintenance of chromosomes protein [Medicago truncatula]
COG	YP_003727750.1	4.00E-83	chromosome segregation protein SMC [Methanohalobium evestigatum Z-7303]
Swissprot	tr\|Q9FJL0\|SMC4_ARATH	0	Structural maintenance of chromosomes protein 4
trEMBL	tr\|G7L8M1\|G7L8M1_MEDTR	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}

Sequence

Transcript Sequence

>Glyur000682s00024316.1
CAAATTTGAAAAGCATCCCCAAAATTCATTTGCCGCCAAACCCCCCGCGACTCCCTGCTTGCTTTTCCAGAGAGAATAGATGTAGAAAAAGAAGAGTTCGAAACTGANAAAAAAGAAGATAAAATAAAATAAAGAAGAGACCTTATTATTGTGCTTGATCTGTGCCCTAAATTCCCAAATCAATTTGCACCCGACTCTCATAGCTCTACTCACTCAAAACGCTTCTTCCGAGTTGACTCGTTCCGCGTCGTCAATGGAACCACAAGCCGACTCAGCTCGTGGACCATCATCCACACGCCCCAGGCTCTTCATTAAGGAGATGGTGATGCGGAACTTCAAGTCCTACGCTGGCGAACAGCGCGTTGGCCCCTTCCACAAGAGTTTTTCGGCTGTGGTTGGACCCAATGGGAGCGGAAAAAGCAACGTGATTGATGCCATGCTGTTTGTGTTCGGGAAGCGAGCGAAGCAGATGCGACTGAACAAGGTTTCGGAGCTTATTCACAATTCTACCAATCACCAGAATTTGGATAGTGCGGGGGTTTCTGTTCATTTTCAGGAGATTGTCGATTTGGATGATGGAACATATGAGGCTGTTCCAGGAAGCGATTTTGTGATAACCAGGGTGGCTTTTCGGGACAACTCCTCTAAGTATTACATTAATGACCGTTCGAGTAACTTTACTGAAGTTACCAAGAAACTGAAAGGGAAAGGTGTTGACCTTGACAATAATAGGTTTCTGATCCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAACCAAAAGCTCAAGGACCCCATGATGAAGGTTTTCTAGAATATTTGGAGGATATCATTGGGACCAACAAATATGTAGAAAGAATTGATGANTCATATAAACAGTTAGAATCCCTGAATGAGAGAAGATCTGGGGTGGTACAAATGGACGTGAAGAATGAAGCAGAAGCATACATGCTTAAAGAGTTATCTCTGTTGAAATGGCAAGAGAAAGCTACAAAGTTAGCTGTTGATGATACTGGTGGAAAAATGGATGAGTTACAAGTAAGCGTTGCTAGCCTAGAAGAAAATCTCAAGGCTGAAAGGGATAAAATACAAGAAAATAAACAAATTCTGAAGGAGCTTGAAACCAAGCACAACAACTATATGAAAAGACAAGAGGAGCTAGATAATGATATGAGGAAATGCAAGGAAGAATTCAAGGAGTTTGAGAGACAGGATGTGAAGTATCGGGAAGATTATAAGCACATGAATCAGAAGATCAAGAAGCTGGAGGATAAAGTGGAAAAGGATTCATCAAAAATTGAAGCCCTTGTAAAAGAGAGTGAAGACTCAACTGATCTGATACCAAAACTTGAGGATAATATCCCAAAACTGCAAAAGTTGTTAATTNATGAGGAGAAGATCTTAGAAGAAATCACAGAGAGTTCCAAAGTTGAAACTGAGAAATTCCGCTCTGAGCTTGCTAAAGTTCGTGCGGAGCTTGAACCATGGGAAAAAGATTTGATTGAGCACAAGGGAAAACTTGAGGTTGCATCTTCCGAGGCCAAGCTTCTAAATGAAAAGCATGAAGGTGCTTGTGAAGCTTTTAAAGATGCTCAAAAGCAGATGAAAAGTATATCAGAAACAATTGAATCTAAAACTTCTAGCATTTCTCAAATTATGAGTGATATAGAAAAGAGCAAGCGTGAAGCATTAGNAGCTCACCAAGTGGAAAAGGAATGTATCAAAGAACAAGATGCCCTGATTCCTCTTGAACAAGATGCTAGACAAAAGGTTGCAGAGCTGAAGTCTGTTCTGGATTCAGAGAAGAGTCAGGGATCAGTTCTAAAAGCAATCTTAAAAGCTAAGGAAACCAAACAAATAGAAGGAATATATGGCCGCATGGGTGATTTAGGTGCTATTGATGCAAAGTATGACGTTGCAATATCAACAGCATGTTCTGGGCTTGATTATATTGTGGTGGAAACAACACATGCAGCACAAGCCTGTGTTGAGTTACTTCGTCGAGAGAATCTTGGCATTGCTACTTTCATGATATTGGAGAAGCAAGTTGATCTTCTTCCATTATTGAAAAAGAATATAAGCACTCCAGAAGGGGTTCCCCGCCTTTTTGATTTAGTGAAGGTTCAAGACGAAAGAATGAAGCTTGCTTTCTTTGCAGCACTTCGAAACACAGTTGTTGCTAAGGATCTTGACCAGGCAACACGCATAGCATATGGTGGAAACAATGAGTTTCGGCGAGTTGTTACTCTTGATGGTGCACTCTTTGAAAAATCTGGAACGATGAGTGGTGGGGGTAGTAAGCCTAAGGGTGGGAGGATAGGGACATCTATTCGAGCTNCAAATGTGTCTGTAGAAGCTGTTGCAAGTGCTGAGAGGGAGTTGTCTGGATTAACTGATAAGTTGAATGTGATTCGCCAAAGAATCATTAANGCTGTGCGACAATATCAGGCTGCAGAAAAAACTGTTGCTGCTTTGGAAATGGAGTTAGCTAAAAGNCAGAAGGAGGTTGACAGTTTGAACTCACAACATAGTTATATTGAAAAACAACTTGATTCCCTTGAAGCTGCATCAAAGCCACAAGAGGATGAACTTGACAGATTGAAAGAGTTGAAGAAGATTATTTCTGCAGAAGAAAGGGAGATTAATAGACTTACTGATGGATCTAGACAGCTGAAGGAAAAGGTGTCGGAGCTTCAGAGGAATATAGAGAATGCTGGGGGTGAAAAGTTAAAATCTCAAAAGTCAAAGGTCCAGAAAATTCAGTCTGATATTGACAAGAATAGCTCGGAGATTAACCGTCACAAGGTCCAAATAGAGACGGGACAAAAGATGATGAAGAAGTTGACTAAGGGAATTGAGGAGTCAAAGAAGGAGAAAGAACGGCTAACTGAGGAGAGGGAAAAACTGAAAGCAAACTTCAAAGAAATAGAACAGAAAGCATTTGTTGTTCAAGAGAATTATAAGCGAACACAAGAGATGATTGATAAACATCGGGATGTCTTAGAGGAAGCAAAATCTGAGCATGATAAGATGAAAAAAGCAGTGGACGAAATGCGTGCATCTGAGGTTGATGCTGACTTCAAATTAAAAGACATGAAGAAAGCATACAAAGAATTGGAAATGAAGGGGAANGGTTACAAGAAAAAACTAGAGGAGTTGCAAACTGCTATTTGCAAGCATCTTGAGCAAATTCAGGCAGATTTAGTGGATCACGAAAAGCTACAGGCTACATTGGCTGATGAACATCTTAATGCTGCCTGTGACCTGAAAAAGGCCTGCGAAATGGTCACATTGCTTGAAGCACAACTGAAGGAGATGAACCCAAATCTTGATTCAATTTCAGAGTATCGAAAGAAGGTATCTTTGTACAATGAGCGAGTTGAAGAACTTAATACAGTTACTCAGGAGCGGGATGATATAAAGAAGCAGTATGATGAATGGAGAAAGAAAAGATTGGATGAGTTTATGGAAGGATTTAATGCCATATCATTAAAGTTAAAGGAAATGTACCAGATGATTACACTTGGAGGTGATGCAGAACTCGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGTGTTGTATTCAGTGTCAGACCACCAAAGAAAAGCTGGAAAAATATTGCTAATTTATCAGGCGGTGAAAAGACACTTAGCTCATTGGCGCTTGTATTTGCTCTNCATCATTACAAGCCTACGCCGCTTTATGTAATGGATGAAATCGATGCTGCCCTGGACTTCAAGAATGTATCTATCGTCGGGCATTACGTGAAAGACAGGACCAAGGATGCTCAATTCATAATCATTAGCCTTAGGAACAATATGTTTGAATTGGCTGATCGACTTGTTGGTATTTATAAAACTGATAACTGCACAAAGAGCATTACCATCGATCCGCGTAGTTTTGTCGTGTGCCAAAAAGCTGCTTGA

Protein Sequence

>Glyur000682s00024316.1
MEPQADSARGPSSTRPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIVDLDDGTYEAVPGSDFVITRVAFRDNSSKYYINDRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKYVERIDXSYKQLESLNERRSGVVQMDVKNEAEAYMLKELSLLKWQEKATKLAVDDTGGKMDELQVSVASLEENLKAERDKIQENKQILKELETKHNNYMKRQEELDNDMRKCKEEFKEFERQDVKYREDYKHMNQKIKKLEDKVEKDSSKIEALVKESEDSTDLIPKLEDNIPKLQKLLIXEEKILEEITESSKVETEKFRSELAKVRAELEPWEKDLIEHKGKLEVASSEAKLLNEKHEGACEAFKDAQKQMKSISETIESKTSSISQIMSDIEKSKREALXAHQVEKECIKEQDALIPLEQDARQKVAELKSVLDSEKSQGSVLKAILKAKETKQIEGIYGRMGDLGAIDAKYDVAISTACSGLDYIVVETTHAAQACVELLRRENLGIATFMILEKQVDLLPLLKKNISTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRIAYGGNNEFRRVVTLDGALFEKSGTMSGGGSKPKGGRIGTSIRAXNVSVEAVASAERELSGLTDKLNVIRQRIIXAVRQYQAAEKTVAALEMELAKXQKEVDSLNSQHSYIEKQLDSLEAASKPQEDELDRLKELKKIISAEEREINRLTDGSRQLKEKVSELQRNIENAGGEKLKSQKSKVQKIQSDIDKNSSEINRHKVQIETGQKMMKKLTKGIEESKKEKERLTEEREKLKANFKEIEQKAFVVQENYKRTQEMIDKHRDVLEEAKSEHDKMKKAVDEMRASEVDADFKLKDMKKAYKELEMKGXGYKKKLEELQTAICKHLEQIQADLVDHEKLQATLADEHLNAACDLKKACEMVTLLEAQLKEMNPNLDSISEYRKKVSLYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITIDPRSFVVCQKAA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00682	43669	57367	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051276 chromosome organization

cellular_component
GO:0005694 chromosome

molecular_function

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000682s00024316.1	PF02463.14	SMC_N	19	1209	1.30E-68
Glyur000682s00024316.1	PF06470.8	SMC_hinge	537	653	4.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.739
SRR1783600	control	3.776
SRR1783602	moderate drought stress	3.477
SRR1811619	moderate drought stress	3.452

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.091
DRR006520	Root Summer glycyrrhizin high producing strain	3.016
DRR006521	Root Winter glycyrrhizin high producing strain	0.850
DRR006522	Root Winter glycyrrhizin high producing strain	0.856
DRR006523	Root Summer glycyrrhizin low producing strain	2.135
DRR006524	Root Summer glycyrrhizin low producing strain	2.097
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.024

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.242
SRR2868004	Drought Stress (root)	12.686
SRR2967015	Control (root)	12.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.516
SRR9715740	Leaf	3.112
SRR9715741	Leaf	3.705
SRR9715739	Root	0.162
SRR9715742	Root	1.180
SRR9715743	Root	0.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.833
SRR8749028	MeJA induced 9h	19.497
SRR8749029	MeJA induced 9h	9.507
SRR8749030	Uninduced	7.965
SRR8749031	Uninduced	7.667
SRR8749032	Uninduced	2.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.450
SRR8400027	Control - Root	11.822