Gene detail

Gene detail information of Glyur000682s00024314

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35470.1	8.00E-161	plant intracellular ras group-related LRR 4
NR	XP_004509465.1	0	PREDICTED: malignant fibrous histiocytoma-amplified sequence 1 homolog isoform X1 [Cicer arietinum]
COG	YP_007098670.1	6.00E-49	leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9SVW8\|PIRL4_ARATH	0	Plant intracellular Ras-group-related LRR protein 4
trEMBL	tr\|V7CM87\|V7CM87_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30026.1}

Sequence

Transcript Sequence

>Glyur000682s00024314.1
ATGGACGAGACAGTGGAAGAGATAATGAGGATTCGGAGATCGCTNCCGGCGAGGCCGAGAACGGAGGAAGTGGAAGCGGCGATGACGGTGGTGGCGAACGCGGAAAAGGAGGAGGTGTCGAGGCTGGCGGCGGCGGCGAGGCAGAGCAAAGTTTCCGACGTGCCGGAAGAGCTTTTGACGGTGGTTGAGGAAATGCAGAAGAGCGTGGTGAGTTTCCAATGCAAGGAGCAGAAGAGGGACGCTCTTAGACTCGTTGATCTCGAAAACCTTCACTCACTCTTCGACCACTTGATTCAGAGAGCTTCCAACTGCGTTTCCAACTCCAACAACAACNACCGTAATAAGAAGAGTAGTGGGCCTAGTAACAAGGCCCAATGGGCTTCCCCTAAGAATTCGGCTTCTGTTTCTTCGGGTTTGCTCAAGAAACCACCGGTGAAGCCTTCACAGTTGTTCAGCAAGGACGATAGTTATTTGAACAAGGCCAAGTCAATTGGACACAGTGAAGAAGAGGCCGGTGGTGATAGTAANAAGTTGAGTTTGATAAAACTGGCCAACTTGATTGAAGTTTGTGCAAAGAAAGGCACGCGCGATCTCAAATTACAGAACAAGTTAATGGATCGAGTGGATTGGTTACCCGAATCGATAGGGAAGTTAACCAGTTTGGTCACTCTGAATTTATCCCAGAATCGGATCATGACCCTGCCTTCCACAATCAGAGGCCTTTCATCACTGACCCGTTTGGATTTGCATTCAAATCGTATCCCAGAACTCCCAGATTCTATAGGAGATCTCATTAACCTGTCTTATCTAAATCTTGATGGGAACCAATTAACCTCATTGCCACCTTCTCTTGGCCAATTGGTGCATCTTGAAGAGCTTCATTTAAACTCAAACCAGCTTTCACTGCTTCCTGACACTATTGGGTCACTTATCAACCTAAAAGTTTTGAACTTGGAGACAAATGACATAGAAGAAATCCCACACTCAATTGGTCGTTGTTGTTCCCTTAAAGTGCTTTGTGCTGATTATAACCGCCTCAAGGCTCTACCTGAAGCCGTGGGGAAGATTCAGAGCCTTGAGGTTTTGTCTGTGCGGTACAACAACATCAAGCAATTGCCCACAACGATGTCGTCTTTGACCAAATTGAGGGAACTTAATGTGAGCTTCAATGAGCTTGAGTCTGTTCCTGAGAGCTTGTGTTTTGCTACCTCTCTTGTTAAGATGAACTTAGGGAACAATTTTGCTGACATGCGAGCCTTACCTAGGTCCATTGGAAACCTCGAAATGCTTGAGGAGTTGGATATTAGTAATAATCAGATACGGGCTCTTCCAGATTCTTTTAGAATGCTCACTCGACTACGCATATTGAGAGCAGTTGTTCAGTACATGGCTGAGCTTGTGGAGAAGAAGGATGTTAAATCACAGCCATTCAGACAGAGAAAGAGTTGGGCTCAAATGTGCTTCTTTTCAAAGTCTAACAAAAGAAAGCGTGACGGGGTTGATTATGTGAAGGCCTGATTAATTAAAATTCAATTAAACCACCAATGTTGGCAAGCAACAGATTCCATTGGAGTTTGGTACCAATCACCCTGTGACTGCTATGGCTAGATTTCTTTAGATGGAACAGTGTGGCAAAGAGTGAATGCAATAGTTAATTGGCTACACTGTCTAAAGAAGATTGGTCAAAGTTATCGTGTCATGCTTGTTGGGTGCCTAATTTTTCTGTGTGTTGTTGACAGGGATATGTGCATTTGTTTATCAAAAGAGACAAAGATATGTCTGTCAGTCTGTGGTCAACATTACATGGAAATGAATTGGCATCCTTCGTTGGCCGTTGGAATTTGCTAACTTTGAGGCACAAACTGTAGATTTCCNTGTTTATATGTGTGTCTGTGTGTCTGTAATAGAATATATAATTTCTGATTTCATCTCATTTGTGTTTCTGTTGTCAAAGAACTGTACATCCAACCAGCAGAAAACAGACATGGGTTGTGTGAAGATCGGGAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00682	35065	38655	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000682s00024314.1	PF00560.28	LRR_1	220	241	0.79
Glyur000682s00024314.1	PF13855.1	LRR_8	242	300	2.50E-09
Glyur000682s00024314.1	PF00560.28	LRR_1	312	333	0.67
Glyur000682s00024314.1	PF12799.2	LRR_4	358	396	1.70E-09
Glyur000682s00024314.1	PF00560.28	LRR_1	430	448	0.029

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.907
SRR1783600	control	0.860
SRR1783602	moderate drought stress	0.797
SRR1811619	moderate drought stress	0.852

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.941
DRR006520	Root Summer glycyrrhizin high producing strain	3.982
DRR006521	Root Winter glycyrrhizin high producing strain	0.110
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	6.917
DRR006524	Root Summer glycyrrhizin low producing strain	7.011
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.429
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.392

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.525
SRR2868004	Drought Stress (root)	1.017
SRR2967015	Control (root)	0.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.634
SRR9715740	Leaf	0.645
SRR9715741	Leaf	0.670
SRR9715739	Root	2.009
SRR9715742	Root	1.578
SRR9715743	Root	1.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.223
SRR8749028	MeJA induced 9h	1.766
SRR8749029	MeJA induced 9h	3.718
SRR8749030	Uninduced	1.167
SRR8749031	Uninduced	1.990
SRR8749032	Uninduced	1.246

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.888
SRR8400027	Control - Root	3.327