Gene detail information of Glyur000682s00024309 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76410.1 | 2.00E-36 | RING/U-box superfamily protein |
| NR | XP_004509462.1 | 2.24E-100 | PREDICTED: RING-H2 finger protein ATL80-like [Cicer arietinum] |
| Swissprot | tr|Q8LC69|ATL8_ARATH | 1.00E-58 | RING-H2 finger protein ATL8 |
| trEMBL | tr|G7L8N9|G7L8N9_MEDTR | 2.00E-91 | Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AET03573.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00682 | 4911 | 5564 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000682s00024309.1 | PF13639.1 | zf-RING_2 | 104 | 147 | 6.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.900 |
| SRR1783600 | control | 9.270 |
| SRR1783602 | moderate drought stress | 24.596 |
| SRR1811619 | moderate drought stress | 22.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.960 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.961 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.888 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.654 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.312 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.073 |
| SRR2868004 | Drought Stress (root) | 2.571 |
| SRR2967015 | Control (root) | 12.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.062 |
| SRR9715740 | Leaf | 1.447 |
| SRR9715741 | Leaf | 0.849 |
| SRR9715739 | Root | 7.416 |
| SRR9715742 | Root | 4.618 |
| SRR9715743 | Root | 5.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.492 |
| SRR8749028 | MeJA induced 9h | 8.998 |
| SRR8749029 | MeJA induced 9h | 7.451 |
| SRR8749030 | Uninduced | 0.432 |
| SRR8749031 | Uninduced | 0.101 |
| SRR8749032 | Uninduced | 2.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.144 |
| SRR8400027 | Control - Root | 1.908 |