Gene detail

Gene detail information of Glyur000681s00027312

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21180.1	0	autoinhibited Ca(2+)-ATPase 9
NR	XP_006595201.1	0	PREDICTED: calcium-transporting ATPase 9, plasma membrane-type-like isoform X1 [Glycine max]
COG	YP_004251993.1	6.00E-132	calcium-translocating P-type ATPase, PMCA-type [Odoribacter splanchnicus DSM 220712]
Swissprot	tr\|Q9LU41\|ACA9_ARATH	0	Calcium-transporting ATPase 9, plasma membrane-type
trEMBL	tr\|I1M613\|I1M613_SOYBN	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000681s00027312.1
ATGACCAACTCGCGTGGTTCGACGTCTTCCTCGAATGGCCTCCTCACCGTCACCATTGCCAGCAACNGCACCGCCCACCACCCTGACGCCGCCATTGACGACGACGACGACGACGACTTGCTCCAAGCAGCATTCGTGCTCAATGCGTCCAGGCGTTTTAGATATACTCTTGACTTGAAGAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGAGCCCATGCACAAGTCATAAGAGCAGCTTTGCTTTTCAGATTGGCCGGTGAACGTGANCTAGTAACTAGTACATCAGTGGCATCCCCAACTCAAGATGGTGACTATGGAGTTGGGCTCGAACAACTTGTTTCGATGTCTAAGAATCAGAATATTTCTGTTTTACAACAATTCGGAGGGGTTAAAGGCTTATCAAAATTACTAAAATCAGATCCGGATAAAGGGGTTAGTGGAGATGATGATGATCTATCAAACAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAGGGGAGAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACCCTTATAATATTGATTATAGCAGCTGCGGTGTCATTGGTACTTGGAATAAAAACAGAGGAGATAGATTTAAAGGATTCTCTTTACATAAATCTGGCCAGGTTTTATCAGGGTTTGAAAGAAGGATGGTTTGACGGGGGAAGCATTGCTTTTGCAGTTTTTCTTGTCATTATAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAACTTGAATGCAGAAAAGCAAAATATACAATTGGAGGCCATAAGAGGTGGCAGAACAATAAAAATATCGATATTTGAAATTGTTGTTGGTGATGTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAGAAAGCACCGTTTTTAATGTCAGGTTGCAAAATAGCAGATGGATTTGGTTCTATGCTGGTAACTGGTGTTGGAATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGCCTTACCGTAGCTGTTTGTGTGCTTGCAGTCCTCTTGGGAAGATACTTTTCTGGCCATACGAAAGATTTAGAAGGAAATGTGCAATTTGTTGCTGGAACGACTAAGATCAGCAATGCTGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCTGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCAATGCGCAAAATGATGGCGGACAAAGCCTTGGTACGAAGGTTATCAGCATGTGAAACTATGGGCTCCGCCACAACAATTTGCAGTGATAAAACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGGGAAATAAACTAAATCAACCAGATGACGTGTCAAAATTGCATCCAGAAGTTTTATCTCTGGTAAATGAAGGCATAGCACAAAATACAACAGGCAATGTTTTCATGCCCAAGGATGGTGGAGAGGCAGAGGTNACAGGATCTCCTACAGAGAAGGCAATTCTATCTTGGGCCGTGAAGTTGGGAATGAATTTTGCACATATTAGATCAAATTCAACAATTCTCCATGTCTTCCCCTTTAATTCTGAGAAAAAGCGAGGCGGTGTTGCTGTGAAACTGGCTGACTCTGGAGTGCATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACATGCACCCAATATCTTGATTCAAATGGTCACCAGCAATCTATTGAAAAAGAGAAGGTATTCTTCAAGAAGGCTATTGATGACATGGCTGATCAGAGCCTGCGTTGTGTTGCTATTGCATACAGATCATATGAATTGGACAAAATTCCGTCTAATGACGATTTAGAGAAGTGGTCCTTACCAGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAACATGCCGTGAATGTATGCACTGCTGCTGGNGTTAAGGTACGCATGGTTACTGGCGACAATCTTCAAACAGCGAAAGCAATAGCTTTGGAGTGNGGAATACTGACTTCGATTGAAGATGCGGTTGAACCAAATATAATTGAAGGAAAGACATTCCGTGAACTNTCTGAAAAAGAAAGGGAGCAAGTTGCTAAGAAAATAACGGTGATGGGAAGGTCTTCTCCAAATGACAAGCTTTTGCTCGTGCAAGCACTGCGTAAAGGTGGTGATGTTGTTGCTGTCACAGGAGATGGCACTAATGATGCTCCTGCACTTCACGAGGTCTGTATATTTCTTGGATATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATACTGGATGATAATTTTGCATCGGTAGTAAAGGTTGTTCGCTGGGGGCGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAGCTAACTGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAACGCAGTACAGGGAACCTCTTATAACGAATATCATGTGGAGGAACTTGCTCGTACAGAGGAAATGAATGTCTTCCGGGGAGTGACTAAGAACCATCTCTTCGTGGGAATTGTTGGAATGACCTTTGTACTTCAGATAATCATCATCCAATTCCTTGGAAAGTTCACGTCAACAGTGGACCTTCATTGGAAGCTGTGGCTTGTTTGTCTTGGTATTGGGATTTTCAGCTGGCCACTTGCAGTAATTGGAAAATTGATACCTGTTCCCAAAACACCATTGTCCCGTTCCTTCATGAAGTCATTCAGGCGCTTGAAGAAGTCCCGTACTGAATAATATTTATAGGCCTGACAGAGAGAGAGAGAGAGAGAGCACCTGCAATTCATACCAAACTAACGACTGACAGACATGTATGTAACAACACATATTGCTGAGCCTTCTTTCTAC

Protein Sequence

>Glyur000681s00027312.1
MTNSRGSTSSSNGLLTVTIASNXTAHHPDAAIDDDDDDDLLQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERXLVTSTSVASPTQDGDYGVGLEQLVSMSKNQNISVLQQFGGVKGLSKLLKSDPDKGVSGDDDDLSNRKNAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAAVSLVLGIKTEEIDLKDSLYINLARFYQGLKEGWFDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNAEKQNIQLEAIRGGRTIKISIFEIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKIADGFGSMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLLGRYFSGHTKDLEGNVQFVAGTTKISNAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGGNKLNQPDDVSKLHPEVLSLVNEGIAQNTTGNVFMPKDGGEAEVTGSPTEKAILSWAVKLGMNFAHIRSNSTILHVFPFNSEKKRGGVAVKLADSGVHIHWKGAAEIVLGTCTQYLDSNGHQQSIEKEKVFFKKAIDDMADQSLRCVAIAYRSYELDKIPSNDDLEKWSLPEHELVLLAIVGIKDPCRPGVKHAVNVCTAAGVKVRMVTGDNLQTAKAIALEXGILTSIEDAVEPNIIEGKTFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEVCIFLGYIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQGTSYNEYHVEELARTEEMNVFRGVTKNHLFVGIVGMTFVLQIIIIQFLGKFTSTVDLHWKLWLVCLGIGIFSWPLAVIGKLIPVPKTPLSRSFMKSFRRLKKSRTE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00681	86006	98631	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005516 calmodulin binding

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000681s00027312.1	PF12515.3	CaATP_NAI	42	65	3.40E-07
Glyur000681s00027312.1	PF00690.21	Cation_ATPase_N	132	198	2.30E-12
Glyur000681s00027312.1	PF00122.15	E1-E2_ATPase	234	482	1.40E-59
Glyur000681s00027312.1	PF00702.21	Hydrolase	487	808	1.30E-27
Glyur000681s00027312.1	PF00689.16	Cation_ATPase_C	906	974	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.469
SRR1783600	control	1.671
SRR1783602	moderate drought stress	2.274
SRR1811619	moderate drought stress	2.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.830
DRR006520	Root Summer glycyrrhizin high producing strain	1.931
DRR006521	Root Winter glycyrrhizin high producing strain	0.878
DRR006522	Root Winter glycyrrhizin high producing strain	0.724
DRR006523	Root Summer glycyrrhizin low producing strain	0.458
DRR006524	Root Summer glycyrrhizin low producing strain	0.382
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.279

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.393
SRR2868004	Drought Stress (root)	0.925
SRR2967015	Control (root)	0.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.701
SRR9715740	Leaf	1.803
SRR9715741	Leaf	1.384
SRR9715739	Root	0.270
SRR9715742	Root	1.394
SRR9715743	Root	1.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.281
SRR8749028	MeJA induced 9h	0.231
SRR8749029	MeJA induced 9h	0.231
SRR8749030	Uninduced	0.214
SRR8749031	Uninduced	0.080
SRR8749032	Uninduced	0.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.531
SRR8400027	Control - Root	6.594