Gene detail information of Glyur000681s00027311 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21190.1 | 3.00E-156 | O-fucosyltransferase family protein |
| NR | XP_007150835.1 | 0 | hypothetical protein PHAVU_005G184800g [Phaseolus vulgaris] |
| trEMBL | tr|V7BY32|V7BY32_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22829.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00681 | 80658 | 84572 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000681s00027311.1 | PF10250.4 | O-FucT | 102 | 409 | 2.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.670 |
| SRR1783600 | control | 13.868 |
| SRR1783602 | moderate drought stress | 18.214 |
| SRR1811619 | moderate drought stress | 18.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.524 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.511 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.398 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.609 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.949 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.911 |
| SRR2868004 | Drought Stress (root) | 21.644 |
| SRR2967015 | Control (root) | 24.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.534 |
| SRR9715740 | Leaf | 20.932 |
| SRR9715741 | Leaf | 9.824 |
| SRR9715739 | Root | 2.597 |
| SRR9715742 | Root | 6.149 |
| SRR9715743 | Root | 5.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.313 |
| SRR8749028 | MeJA induced 9h | 6.348 |
| SRR8749029 | MeJA induced 9h | 7.590 |
| SRR8749030 | Uninduced | 3.745 |
| SRR8749031 | Uninduced | 2.720 |
| SRR8749032 | Uninduced | 3.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.272 |
| SRR8400027 | Control - Root | 38.240 |