Gene detail

Gene detail information of Glyur000681s00027308

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13320.1	3.00E-162	cation exchanger 2
NR	XP_004486589.1	0	PREDICTED: vacuolar cation/proton exchanger 2-like isoform X1 [Cicer arietinum]
COG	NP_484670.1	2.00E-76	H+/Ca2+ exchanger [Nostoc sp. PCC 7120]
Swissprot	tr\|Q5KQN0\|CAX2_ORYSJ	0	Vacuolar cation/proton exchanger 2
trEMBL	tr\|I1M610\|I1M610_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G44960.1}

Sequence

Transcript Sequence

>Glyur000681s00027308.1
TGGTGCTTCTTGCTGCTGCTGCTGGTGGTGTGGGTTCCCACCTCTATTCCGTTATCGGATATTGCCAAAGCACACAAACAAAGAGAAGCGAACTGGCTTACGCTTACGCAGCAGTTGCTTGCGGTAGTAGATGAGTTCTGTNTCTGTGGTGGAGGAGAAGATGGACGCTGATTTCGATGAGGAGACTCCCTTCAGCTCTTCTTCACCCTCTTCTGCATCTAAAGCAACCAACAATACGTTTAATTTCGAGACCAAAGTTGCTCTGCCGCTTCCCAAATCGTCCATCTTTAACCTCTTACGGACGAGACGAATCAGTAGGAGTATATATGTGGTCTTAATTAAGGCCAAGATCAACATGTTGCTACCCTTTGGTCCCTTGGCCATATTGCTCCATTACATTACCGGAAAGCATGGATGGGTCTTCTTCTTCGCCTTATTGGGTATTGCTCCTTTGGCAGAACGTCTTGGTTATGCTACTGAGCAGCTTGCCTTCTACACGGGACCAACAGTTGGGGGTCTGCTTAATGCCACGTTTGGGAATGCAACTGAAATGATTATATCCATTTATGCATTGAAAAGCGATATGATTAGGGTTGTTCAGCAATCTTTACTCGGTTCAATCTTGTCTAATATGCTTCTAGTTCTTGGGTGTGCATTCTTTACTGGTGGGATTGTCCACTACCAAAAAGTTCAGGTTTTCAATAAGGCAGCTGCTGTTGTCAATTCTGGCTTGCTATTGATGGCTGTAATGGGAATACTATTTCCTGNTGTGCTTCATTTTACTCACTCAGAGGCTCACCTTGGGAAGTCAGTGTTATCTCTATCAAGATTTAGCAGCTGTATAATGCTAGTGGCTTATGCAAGCTACCTTTTCTTTCAGCTTAGAAGTCAACAAAATTATTACAGTGCAGTTGATGAGGAAGGAGATACAAGTGAAAATCCCGAGGAGGAAGAACTTGAATTAACTCAATGGGAATCGATAATCTGGCTTGCTATTTTAACAGCATGGGTATCGATATTGTCCGGATACCTTGTTGATGCCATCCAGGGAGCATCTGAATCATTGAACATGTCAGTTGCTTTTATTAGTGTCATCTTGCTTCCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCNTGAAGGACAAGCTTGATATCACAATTGGAGTCGCTGTTGGATCATCTACACAGATATCTATGTTTGTGATCCCCTTCTGCGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAGCTCTTTGAGACTGCCACACTTTTTATCACTGTGTTGGTAGTTGCATTCATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCAAAAAGTGGTGAGTTTACTGATAACATACTACATAGATTCATGGTGATGACTAAATATAGTGTGGGTGTGGCAGCTGTCCATGTTGCCTTTCTACACTTGGAAAGGTAGAAAGCAGTGTGTTTGAAAGGTTTCCAAAAAACAAAAACAAAAAAAAATATCTTCAGCCTGCATTCAACATGGCGAGGGAAACCGTGAAGTGACCACGAGCAATGCACTGTACTGAAAGTTTTCAGCCTTGTATTATATTGAATTTTGAAAGGATGCCTTCATCAGTATTATTTTGATCTCCATAGTTTCCATTCATTTACCATAAAATCTTACAGCCTTTTAAGCTCTCATATCTCTAATGAATCACGTTGAAAATAACCAATCCTTGCAAATATTTTTCTTTTTGGTTCGTAGCGCGCGTCTAGTTTGAAATTATTGGAATTCTTCAGTCGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00681	58699	66232	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006816 calcium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0008324 cation transmembrane transporter activity

GO:0015369 calcium:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000681s00027308.1	PF01699.19	Na_Ca_ex	103	249	6.70E-22
Glyur000681s00027308.1	PF01699.19	Na_Ca_ex	292	422	2.50E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.726
SRR1783600	control	18.549
SRR1783602	moderate drought stress	10.855
SRR1811619	moderate drought stress	10.603

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.976
DRR006520	Root Summer glycyrrhizin high producing strain	17.895
DRR006521	Root Winter glycyrrhizin high producing strain	15.516
DRR006522	Root Winter glycyrrhizin high producing strain	15.155
DRR006523	Root Summer glycyrrhizin low producing strain	31.667
DRR006524	Root Summer glycyrrhizin low producing strain	30.899
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	64.389
SRR2868004	Drought Stress (root)	70.055
SRR2967015	Control (root)	56.769

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.590
SRR9715740	Leaf	52.396
SRR9715741	Leaf	76.664
SRR9715739	Root	15.835
SRR9715742	Root	30.938
SRR9715743	Root	27.498

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.685
SRR8749028	MeJA induced 9h	43.667
SRR8749029	MeJA induced 9h	53.992
SRR8749030	Uninduced	37.197
SRR8749031	Uninduced	63.870
SRR8749032	Uninduced	55.175

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.196
SRR8400027	Control - Root	43.784