Gene detail information of Glyur000681s00027307.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21240.1 | 1.00E-163 | 4-coumarate:CoA ligase 2 |
| NR | AAL35216.1 | 0 | 4-coumarate:CoA ligase [Amorpha fruticosa] |
| COG | YP_003291469.1 | 1.00E-71 | AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|O24145|4CL1_TOBAC | 0 | 4-coumarate--CoA ligase 1 |
| trEMBL | tr|Q8W558|Q8W558_9FABA | 0 | 4-coumarate:CoA ligase {ECO:0000313|EMBL:AAL35216.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00681 | 51300 | 57208 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000681s00027307.1 | PF00501.23 | AMP-binding | 36 | 397 | 1.70E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.614 |
| SRR1783600 | control | 8.618 |
| SRR1783602 | moderate drought stress | 5.789 |
| SRR1811619 | moderate drought stress | 5.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.632 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.312 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.175 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.470 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.454 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.002 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 79.052 |
| SRR2868004 | Drought Stress (root) | 96.461 |
| SRR2967015 | Control (root) | 80.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.648 |
| SRR9715740 | Leaf | 3.613 |
| SRR9715741 | Leaf | 6.278 |
| SRR9715739 | Root | 20.278 |
| SRR9715742 | Root | 22.555 |
| SRR9715743 | Root | 20.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.721 |
| SRR8749028 | MeJA induced 9h | 43.826 |
| SRR8749029 | MeJA induced 9h | 9.433 |
| SRR8749030 | Uninduced | 18.334 |
| SRR8749031 | Uninduced | 10.751 |
| SRR8749032 | Uninduced | 13.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.282 |
| SRR8400027 | Control - Root | 46.814 |