Gene detail

Gene detail information of Glyur000681s00027305

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73110.1	3.00E-124	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	AFK47013.1	0	unknown [Lotus japonicus]
COG	YP_007111326.1	3.00E-77	ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9LRH9\|RCA_ORYSJ	6.00E-81	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Precursor)
trEMBL	tr\|I3T3C1\|I3T3C1_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK47013.1}

Sequence

Transcript Sequence

>Glyur000681s00027305.1
ATGGCGAAACTGTTACCGTTATGGGTTCCAACTCCGAAGCTGCTGCTAGGAAATGCATTCAGAGCGCGANTCTGTGTTCGGTGCAGCGATGAAGAGAAAGAGAAGAATAAGAAGAAGAGGCTGTCAAAGCAGTCTTCGTGGGAAGCGAAAGACGCGGAGGGAAGAGACTATCTGTATAGGCTCGGCAAAGAGGCCGATAACATGAACATCGCCGTTGGCCAGCGTGCTGGCCGGACATTGTGTTTGATTATCGTCAGAAAGACAAAGTTGGTAAGTTCTCTGAAAGTGGCCCATTGTGAAGATCATGTGACATTTTTATGCAAAAGAGAGCTTGGTATTTGGGGAGGAAAAGGGCAAGGNAAATCATTTCAAACAGAACTTATATTTCAGGCCATGGGAATTGAACCTGTAATTATGTCTGCTGGGGAGCTAGAATCAGAGAGAGCTGGAGAGCCAGGAAGATTGATTCGTGAACGCTATAGAACAGCATCTCAAGTGGTCCAGAATCAAGGAAAAATGAGCTGTTTGATGATCAATGACATTGATGCTGGCCTTGGTAGATTTGGGAATACTCAAATGACAGTCAACAATCAGATTGTTGTTGGGACTCTTATGAATCTTTCAGACAATCCTACAAGAGTTAGTATTGGTCAAGATTGGCGAGAATCAGATGTTACAAACAGAATTCCAATCATTGTAACAGGGAATGATTTTTCAACTATTTATGCTCCACTGATACGTGATGGAAGGATGGATAAATTTTACTGGCAGCCTAACCGTGAAGATATCCTGAATATTGTTCTCAGAATGTATGAGAAAGATGGCATACCTAGGGATGAAGTTGAAAGAATTGTGGACACTTTTCCTAATCAAGGTGTTGAAAATTTTGGAAATAAATTTCTCAAAAGAAGAAAAGACCAGAACCTTCCTGTATTTATTCCTCCAGAGCAAACGGTCGACGCTTTACTTGAGTCAGGTTATTCTCTGATCAAAGAGCAACAGTTGATAATGGAAACTAAGCTTTCAAAGGAATACATGAAGAACATAGGAGACTAATAAAGCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00681	34408	41387	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000681s00027305.1	PF00004.24	AAA	113	256	1.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.010
SRR1783600	control	8.748
SRR1783602	moderate drought stress	6.435
SRR1811619	moderate drought stress	6.089

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.685
DRR006520	Root Summer glycyrrhizin high producing strain	14.527
DRR006521	Root Winter glycyrrhizin high producing strain	3.687
DRR006522	Root Winter glycyrrhizin high producing strain	3.373
DRR006523	Root Summer glycyrrhizin low producing strain	12.838
DRR006524	Root Summer glycyrrhizin low producing strain	12.720
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.220
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.397
SRR2868004	Drought Stress (root)	18.475
SRR2967015	Control (root)	9.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.728
SRR9715740	Leaf	29.391
SRR9715741	Leaf	36.116
SRR9715739	Root	1.308
SRR9715742	Root	3.487
SRR9715743	Root	2.728

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.629
SRR8749028	MeJA induced 9h	8.078
SRR8749029	MeJA induced 9h	3.013
SRR8749030	Uninduced	5.801
SRR8749031	Uninduced	2.182
SRR8749032	Uninduced	4.411

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.919
SRR8400027	Control - Root	22.054