Gene detail information of Glyur000680s00022886 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17070.1 | 3.00E-103 | peptidyl-prolyl cis-trans isomerases |
| NR | KHN40526.1 | 8.46E-177 | Peptidyl-prolyl cis-trans isomerase-like 3 [Glycine soja] |
| trEMBL | tr|I1N445|I1N445_SOYBN | 1.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G48350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00680 | 94189 | 98174 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000680s00022886.1 | PF00160.16 | Pro_isomerase | 222 | 286 | 1.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.883 |
| SRR1783600 | control | 0.688 |
| SRR1783602 | moderate drought stress | 0.774 |
| SRR1811619 | moderate drought stress | 0.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.337 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.287 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.437 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.070 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.938 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.187 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.298 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.964 |
| SRR2868004 | Drought Stress (root) | 7.606 |
| SRR2967015 | Control (root) | 6.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.893 |
| SRR9715740 | Leaf | 2.095 |
| SRR9715741 | Leaf | 2.375 |
| SRR9715739 | Root | 0.763 |
| SRR9715742 | Root | 2.321 |
| SRR9715743 | Root | 1.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.715 |
| SRR8749028 | MeJA induced 9h | 2.183 |
| SRR8749029 | MeJA induced 9h | 1.055 |
| SRR8749030 | Uninduced | 1.018 |
| SRR8749031 | Uninduced | 1.755 |
| SRR8749032 | Uninduced | 1.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.053 |
| SRR8400027 | Control - Root | 8.055 |