Gene detail

Gene detail information of Glyur000680s00022883.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79500.4	1.00E-150	Aldolase-type TIM barrel family protein
NR	AFK43441.1	0	unknown [Lotus japonicus]
COG	YP_004862459.1	2.00E-97	3-deoxy-7-phosphoheptulonate synthase [Candidatus Chloracidobacterium thermophilum B]
Swissprot	tr\|O50044\|KDSA_PEA	0	2-dehydro-3-deoxyphosphooctonate aldolase
trEMBL	tr\|I3ST49\|I3ST49_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK43441.1}

Sequence

Transcript Sequence

>Glyur000680s00022883.1
GTTCGTACTTTTTTTTTGTGAGAAAAAAAAACGAAAAAAAAAAGGTCGTACTCGTTAGCATCTTCGTTTTCATAGTGATGCCAATGTCGATGTTGTTGCTGAATAGCTGAAACCTGAATCTAGCGAGTCTCCGACAATTATTTAGTTATTACACTTTTTTTTTTGCTGTCTCCTGATTCCATCGTTATCATCAAGCTACAAAGCTACATTTTCTGAAAGGAAAAAATGGATCCATCGGCATTGCTGTATAGCCAGCTCAAGGCTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAACGTGATTGAATCAGAGGAGCACATTATGCGGATGGCTAAGCACATAAAGAGCATTGCATCTAAAGTTGGAATTCCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCGTCAAAATCATTTCGTGGCCCNGGGATGGTTGAGGGTTTGAAGATACTTGAGAAGGTTAAAATAGCCTACGACCTCCCTATAGTGACAGATGTGCATGAGAGCATCCAGTGTGAACAAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTATGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATCATCCACATCAAGAAGGGCCAGTTCTGTGCTCCTTCTGTCATGGCAAATTCAGCTGAAAAGGTTCGGTTAGCAGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACTACGTTTGGCTACAATGATTTGATTGTTGATCCACGTAACCTGGAGTGGATGAGAGAAGCCAATTGTCCTGTTGTGGCTGATATAACACACTCACTACAACAGCCTGCTGGAAATAAGTTGGATGGAGGAGGTGTTGCAAGTGGAGGTCTTCGGGAACTAATACCATGCATTGCAAGGACTGCAGTCGCCGTTGGAGTGGACGGAATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTCGATGGTCCAACACAGTGGCCTTTGCGCCACTTCGAGGAGCTACTTGAAGAGCTTGTGGCTATTTCTAGGGCAAGCAAAGGGAAGCAGCGATTCAACATTGATCTCACTCCATTTCGTGAATAAGAATGGTGATGGTTGAGTTATTCTTAATATAATTCCTTGAGCATTGGTCAAGGCTGATTACTAAACTGCCTTCATTTCCTTGCACAAGTTCAAGTGCCTCATGAGAGGATTTATCCTAAAAACTTTGTGTGATGATCCATGCTTGTTTCNCCTCCATGTAGTGACACTACCAACTCAAGTTTGTCACTTATCCNGTGTAGCCTTAATCCTGTTGAGGCAATTAAGTATAAAAGTATAGTAGATTATTATGTCTCTTGTTAGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00680	76063	82300	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01627	kdsA	EC:2.5.1.55	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0008676 3-deoxy-8-phosphooctulonate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000680s00022883.1	PF00793.15	DAHP_synth_1	14	273	1.30E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.709
SRR1783600	control	19.396
SRR1783602	moderate drought stress	12.737
SRR1811619	moderate drought stress	12.702

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.698
DRR006520	Root Summer glycyrrhizin high producing strain	32.545
DRR006521	Root Winter glycyrrhizin high producing strain	7.425
DRR006522	Root Winter glycyrrhizin high producing strain	6.852
DRR006523	Root Summer glycyrrhizin low producing strain	17.497
DRR006524	Root Summer glycyrrhizin low producing strain	18.380
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.658
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.749

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.408
SRR2868004	Drought Stress (root)	17.894
SRR2967015	Control (root)	19.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.878
SRR9715740	Leaf	7.716
SRR9715741	Leaf	5.485
SRR9715739	Root	14.567
SRR9715742	Root	13.509
SRR9715743	Root	13.142

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.083
SRR8749028	MeJA induced 9h	13.825
SRR8749029	MeJA induced 9h	17.013
SRR8749030	Uninduced	2.177
SRR8749031	Uninduced	1.250
SRR8749032	Uninduced	2.516

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.487
SRR8400027	Control - Root	42.997